The 2.0 version of rSNPBase

Variant report

Variant rs28629274
Chromosome Location chr19:40653296-40653297
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:40647400-40654400 Enhancers Primary T cells fromperipheralblood blood
2 chr19:40647800-40654000 Enhancers Primary B cells from peripheral blood blood
3 chr19:40648000-40654200 Enhancers Primary T helper cells PMA-I stimulated --
4 chr19:40648200-40654600 Enhancers Primary T killer memory cells from peripheral blood blood
5 chr19:40648800-40655000 Enhancers Primary monocytes fromperipheralblood blood
6 chr19:40649800-40654400 Enhancers Primary Natural Killer cells fromperipheralblood blood
7 chr19:40650200-40653800 Enhancers Primary B cells from cord blood blood
8 chr19:40650600-40653400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
9 chr19:40650600-40654000 Enhancers Primary T helper naive cells from peripheral blood blood
10 chr19:40650600-40654400 Enhancers Primary hematopoietic stem cells short term culture blood
11 chr19:40652000-40653400 Weak transcription Primary T cells from cord blood blood
12 chr19:40652000-40653400 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr19:40652200-40653400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
14 chr19:40652600-40653600 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr19:40652800-40653400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr19:40652800-40654200 Enhancers Primary T killer naive cells fromperipheralblood blood
17 chr19:40653000-40653400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr19:40653000-40653400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr19:40653000-40654000 Enhancers HUVEC blood vessel
20 chr19:40653000-40654200 Enhancers Primary T helper memory cells from peripheral blood 1 blood
21 chr19:40653000-40654600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
22 chr19:40653000-40654800 Enhancers Primary hematopoietic stem cells blood
23 chr19:40653200-40653400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr19:40653200-40653400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr19:40653200-40653400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
26 chr19:40653200-40653400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
27 chr19:40653200-40653400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
28 chr19:40653200-40653400 Enhancers Brain Angular Gyrus brain
29 chr19:40653200-40653400 Flanking Bivalent TSS/Enh Duodenum Mucosa Duodenum
30 chr19:40653200-40653400 Enhancers Placenta Placenta
31 chr19:40653200-40653400 Enhancers Hela-S3 cervix
32 chr19:40653200-40653400 Flanking Active TSS NH-A brain
33 chr19:40653200-40653400 Enhancers Osteobl bone
34 chr19:40653200-40653600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr19:40653200-40653600 Enhancers Rectal Mucosa Donor 31 rectum
36 chr19:40653200-40653600 Enhancers A549 lung
37 chr19:40653200-40653600 Enhancers NHDF-Ad bronchial
38 chr19:40653200-40653600 Enhancers NHEK skin
39 chr19:40653200-40653800 Enhancers Colonic Mucosa Colon
40 chr19:40653200-40653800 Enhancers Skeletal Muscle Female skeletal muscle
41 chr19:40653200-40654000 Enhancers Esophagus oesophagus
42 chr19:40653200-40654000 Enhancers Fetal Thymus thymus
43 chr19:40653200-40654000 Flanking Active TSS GM12878-XiMat blood
44 chr19:40653200-40654000 Enhancers HSMMtube muscle
45 chr19:40653200-40654200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr19:40653200-40654200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
47 chr19:40653200-40654200 Enhancers Muscle Satellite Cultured Cells --
48 chr19:40653200-40654200 Enhancers Fetal Adrenal Gland Adrenal Gland
49 chr19:40653200-40654200 Enhancers Spleen Spleen
50 chr19:40653200-40654200 Enhancers HMEC breast

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Last update: Aug 31, 2015