Variant report

Variant	rs2915972
Chromosome Location	chr19:40626824-40626825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:40475093..40477810-chr19:40625856..40627495,2	K562	blood:

Variant related genes	Relation type
ENSG00000013275	Chromatin interaction

Extended variants
information (count: 170 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:164)

rs_ID	r²[population]
rs1007628	0.82[JPT][hapmap]
rs10401980	0.87[ASN][1000 genomes]
rs10406738	0.85[JPT][hapmap]
rs1327185	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1327187	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1327188	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1327189	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1327190	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1327191	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1327192	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1327193	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16973950	0.83[CHB][hapmap];0.82[JPT][hapmap]
rs16974093	0.88[ASN][1000 genomes]
rs170900	0.86[JPT][hapmap]
rs170901	0.85[JPT][hapmap]
rs173061	0.85[JPT][hapmap]
rs17796901	0.87[CHD][hapmap];0.85[JPT][hapmap]
rs17797100	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs183504	1.00[CEU][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs1854098	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs186815	0.85[JPT][hapmap]
rs1926931	0.82[ASN][1000 genomes]
rs1926932	0.82[ASN][1000 genomes]
rs1926933	0.82[ASN][1000 genomes]
rs1926934	0.82[ASN][1000 genomes]
rs1998931	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2111543	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs2111544	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs2231737	1.00[CEU][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes]
rs234301	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs234302	0.85[JPT][hapmap]
rs234304	0.85[JPT][hapmap]
rs234309	0.87[CHD][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap]
rs234318	0.85[JPT][hapmap]
rs234323	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs234324	1.00[CEU][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];0.88[TSI][hapmap]
rs234325	1.00[CEU][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];0.88[TSI][hapmap]
rs234340	0.86[JPT][hapmap]
rs234341	1.00[CEU][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.88[TSI][hapmap]
rs234352	0.85[JPT][hapmap]
rs234353	0.87[CHD][hapmap];0.85[JPT][hapmap];0.90[TSI][hapmap]
rs234355	1.00[CEU][hapmap];0.87[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap]
rs234361	0.85[JPT][hapmap]
rs234370	0.80[CHD][hapmap];0.85[JPT][hapmap]
rs234374	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs24135	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs24136	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.98[ASN][1000 genomes]
rs24137	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2569639	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2569640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2569641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2569642	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2569643	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2569644	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2569645	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2569648	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2569649	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2569650	0.93[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2569651	0.92[ASN][1000 genomes]
rs2767592	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2767593	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2767594	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2767595	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2767596	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2767597	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2767598	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2767601	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2767603	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2767604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2767605	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2767606	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2767607	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2767608	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2767609	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2819955	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2819956	0.87[CHD][hapmap];0.85[JPT][hapmap]
rs2819958	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28629274	0.88[ASN][1000 genomes]
rs28890790	0.89[ASN][1000 genomes]
rs2970102	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2986595	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs337779	0.85[JPT][hapmap]
rs337780	0.86[JPT][hapmap]
rs337784	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs337785	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs337786	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs337787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs337788	0.98[ASN][1000 genomes]
rs337789	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.98[ASN][1000 genomes]
rs337790	0.98[ASN][1000 genomes]
rs337791	0.96[ASN][1000 genomes]
rs337792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs337793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs337794	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs337799	0.80[CHD][hapmap];0.85[JPT][hapmap]
rs371500	0.85[JPT][hapmap]
rs387202	0.85[JPT][hapmap]
rs3887029	1.00[CEU][hapmap]
rs392958	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs3930885	0.83[EUR][1000 genomes]
rs421533	0.80[CHD][hapmap];0.85[JPT][hapmap]
rs426950	0.80[CHD][hapmap];0.85[JPT][hapmap]
rs4577216	0.87[CHD][hapmap];0.85[JPT][hapmap];0.81[TSI][hapmap]
rs459091	0.80[CHD][hapmap]
rs57219798	0.83[EUR][1000 genomes]
rs57880771	0.82[ASN][1000 genomes]
rs57900299	0.81[ASN][1000 genomes]
rs58003479	0.88[ASN][1000 genomes]
rs58210425	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58284735	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58395013	0.80[ASN][1000 genomes]
rs58440570	0.80[ASN][1000 genomes]
rs58899236	0.98[ASN][1000 genomes]
rs58941665	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs59502139	0.80[ASN][1000 genomes]
rs60449727	0.81[ASN][1000 genomes]
rs61236589	0.83[EUR][1000 genomes]
rs61385499	0.83[EUR][1000 genomes]
rs7247527	0.82[JPT][hapmap]
rs7258506	0.80[ASN][1000 genomes]
rs7258627	0.80[ASN][1000 genomes]
rs7258974	0.82[ASN][1000 genomes]
rs7259855	0.82[ASN][1000 genomes]
rs7260378	0.82[ASN][1000 genomes]
rs73546001	0.83[EUR][1000 genomes]
rs73546002	0.83[EUR][1000 genomes]
rs73547618	0.83[EUR][1000 genomes]
rs73547620	0.83[EUR][1000 genomes]
rs73547638	0.83[EUR][1000 genomes]
rs73547652	0.83[EUR][1000 genomes]
rs73547656	0.83[EUR][1000 genomes]
rs73547663	0.83[EUR][1000 genomes]
rs73547696	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73547702	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73549804	0.88[AMR][1000 genomes]
rs73549810	0.80[ASN][1000 genomes]
rs73549811	0.80[ASN][1000 genomes]
rs73549820	0.80[ASN][1000 genomes]
rs73549825	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73549826	0.82[ASN][1000 genomes]
rs73549829	0.82[ASN][1000 genomes]
rs73549833	0.82[ASN][1000 genomes]
rs73549835	0.82[ASN][1000 genomes]
rs73549836	0.82[ASN][1000 genomes]
rs73549877	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73551642	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73551661	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73551662	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73551663	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73551668	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73551674	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73551675	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73551681	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73551683	0.93[ASN][1000 genomes]
rs73551685	0.94[ASN][1000 genomes]
rs73551687	0.94[ASN][1000 genomes]
rs73551688	0.94[ASN][1000 genomes]
rs73551689	0.94[ASN][1000 genomes]
rs73551691	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73551695	0.93[ASN][1000 genomes]
rs73553603	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8103294	0.89[ASN][1000 genomes]
rs8105066	0.80[CHD][hapmap];0.85[JPT][hapmap]
rs8106032	1.00[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1826663	chr19:40529943-41023601	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	nsv2488	chr19:40593818-40631406	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv911697	chr19:40599603-40711333	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv2758499	chr19:40612420-40839520	Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	esv2758761	chr19:40612420-40839520	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2915972	FCGBP	cis	multi-tissue	Pritchard

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40625600-40627000	Enhancers	HepG2	liver

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