Variant report
| Variant | rs3887029 |
|---|---|
| Chromosome Location | chr19:40448787-40448788 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr19:40441200-40449000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 2 | chr19:40442000-40450400 | Weak transcription | Brain Substantia Nigra | brain |
| 3 | chr19:40442400-40449000 | Weak transcription | Pancreas | Pancrea |
| 4 | chr19:40442400-40450400 | Weak transcription | Lung | lung |
| 5 | chr19:40446600-40449200 | Flanking Active TSS | Dnd41 | blood |
| 6 | chr19:40446800-40448800 | Enhancers | Primary hematopoietic stem cells | blood |
| 7 | chr19:40446800-40451600 | Enhancers | Sigmoid Colon | Sigmoid Colon |
| 8 | chr19:40446800-40453000 | Enhancers | Fetal Intestine Large | intestine |
| 9 | chr19:40446800-40453000 | Enhancers | Stomach Mucosa | stomach |
| 10 | chr19:40447000-40449200 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 11 | chr19:40447000-40449200 | Enhancers | Primary hematopoietic stem cells short term culture | blood |
| 12 | chr19:40447000-40449800 | Enhancers | Fetal Muscle Leg | muscle |
| 13 | chr19:40447000-40450400 | Enhancers | Thymus | Thymus |
| 14 | chr19:40447000-40450800 | Enhancers | Fetal Thymus | thymus |
| 15 | chr19:40447200-40449600 | Weak transcription | Fetal Muscle Trunk | muscle |
| 16 | chr19:40447200-40453000 | Enhancers | Fetal Intestine Small | intestine |
| 17 | chr19:40447400-40449000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 18 | chr19:40447400-40449000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 19 | chr19:40447400-40449000 | Weak transcription | Esophagus | oesophagus |
| 20 | chr19:40447400-40449000 | Weak transcription | Rectal Smooth Muscle | rectum |
| 21 | chr19:40447400-40449600 | Weak transcription | Placenta | Placenta |
| 22 | chr19:40447400-40450200 | Enhancers | Duodenum Smooth Muscle | Duodenum |
| 23 | chr19:40447400-40451200 | Enhancers | Primary monocytes fromperipheralblood | blood |
| 24 | chr19:40447600-40451000 | Weak transcription | Brain Hippocampus Middle | brain |
| 25 | chr19:40447600-40451400 | Enhancers | Fetal Kidney | kidney |
| 26 | chr19:40447800-40448800 | Weak transcription | Spleen | Spleen |
| 27 | chr19:40447800-40449000 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 28 | chr19:40447800-40449600 | Enhancers | Duodenum Mucosa | Duodenum |
| 29 | chr19:40447800-40449600 | Enhancers | A549 | lung |
| 30 | chr19:40447800-40451600 | Enhancers | Colonic Mucosa | Colon |
| 31 | chr19:40447800-40452800 | Enhancers | Primary Natural Killer cells fromperipheralblood | blood |
| 32 | chr19:40447800-40457000 | Enhancers | Primary T helper memory cells from peripheral blood 1 | blood |
| 33 | chr19:40448000-40449000 | Weak transcription | Gastric | stomach |
| 34 | chr19:40448000-40450000 | Weak transcription | HMEC | breast |
| 35 | chr19:40448200-40449000 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 36 | chr19:40448200-40453200 | Enhancers | Primary B cells from peripheral blood | blood |
| 37 | chr19:40448400-40449000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 38 | chr19:40448400-40449000 | Enhancers | Primary T helper naive cells fromperipheralblood | blood |
| 39 | chr19:40448400-40449000 | Enhancers | Rectal Mucosa Donor 31 | rectum |
| 40 | chr19:40448400-40449200 | Enhancers | Small Intestine | intestine |
| 41 | chr19:40448400-40449600 | Enhancers | Primary T cells from cord blood | blood |
| 42 | chr19:40448400-40449600 | Enhancers | Primary T cells fromperipheralblood | blood |
| 43 | chr19:40448400-40449600 | Enhancers | Primary T regulatory cells fromperipheralblood | blood |
| 44 | chr19:40448400-40449600 | Enhancers | Primary T killer naive cells fromperipheralblood | blood |
| 45 | chr19:40448400-40449600 | Weak transcription | Liver | Liver |
| 46 | chr19:40448400-40449600 | Enhancers | Rectal Mucosa Donor 29 | rectum |
| 47 | chr19:40448400-40450000 | Enhancers | Primary T killer memory cells from peripheral blood | blood |
| 48 | chr19:40448400-40450200 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
| 49 | chr19:40448400-40450200 | Enhancers | Primary T helper 17 cells PMA-I stimulated | -- |
| 50 | chr19:40448400-40455600 | Enhancers | Primary T helper memory cells from peripheral blood 2 | blood |
