The 2.0 version of rSNPBase

Variant report

Variant rs60449727
Chromosome Location chr19:40592298-40592299
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:40581800-40595600 Weak transcription Stomach Mucosa stomach
2 chr19:40583000-40595400 Weak transcription NHLF lung
3 chr19:40583200-40595400 Weak transcription H9 Cell Line embryonic stem cell
4 chr19:40583200-40595400 Weak transcription Lung lung
5 chr19:40583200-40595400 Weak transcription Psoas Muscle Psoas
6 chr19:40583200-40595400 Weak transcription NH-A brain
7 chr19:40583200-40596000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr19:40583400-40595400 Weak transcription Small Intestine intestine
9 chr19:40583800-40595400 Weak transcription Right Ventricle heart
10 chr19:40586600-40594800 Weak transcription Fetal Heart heart
11 chr19:40586600-40595400 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr19:40586600-40595400 Weak transcription iPS-18 Cell Line embryonic stem cell
13 chr19:40586800-40594600 Weak transcription Fetal Brain Male brain
14 chr19:40586800-40595400 Weak transcription Hela-S3 cervix
15 chr19:40587200-40595400 Weak transcription Placenta Placenta
16 chr19:40588800-40593000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr19:40588800-40594800 Weak transcription Fetal Kidney kidney
18 chr19:40589200-40594800 Weak transcription iPS-20b Cell Line embryonic stem cell
19 chr19:40589200-40595400 Weak transcription HSMMtube muscle
20 chr19:40589400-40594200 Weak transcription Primary hematopoietic stem cells blood
21 chr19:40589400-40594600 Weak transcription Colon Smooth Muscle Colon
22 chr19:40589400-40595200 Weak transcription HMEC breast
23 chr19:40589400-40595400 Weak transcription HSMM muscle
24 chr19:40589400-40595600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr19:40589400-40595600 Weak transcription Osteobl bone
26 chr19:40589600-40594200 Weak transcription Pancreatic Islets Pancreatic Islet
27 chr19:40589600-40595000 Weak transcription K562 blood
28 chr19:40589600-40595000 Weak transcription NHDF-Ad bronchial
29 chr19:40589600-40595200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
30 chr19:40589600-40595400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr19:40589600-40595800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
32 chr19:40589600-40595800 Weak transcription Placenta Amnion Placenta Amnion
33 chr19:40589800-40595400 Weak transcription H1 Cell Line embryonic stem cell
34 chr19:40589800-40595400 Weak transcription Rectal Mucosa Donor 31 rectum
35 chr19:40590200-40595000 Weak transcription Muscle Satellite Cultured Cells --
36 chr19:40590200-40595200 Weak transcription Brain Substantia Nigra brain
37 chr19:40590400-40593600 Weak transcription Cortex derived primary cultured neurospheres brain
38 chr19:40590400-40593800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr19:40590400-40594000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
40 chr19:40590400-40594600 Weak transcription Fetal Brain Female brain
41 chr19:40590400-40595400 Weak transcription Brain Inferior Temporal Lobe brain
42 chr19:40590400-40595400 Weak transcription Rectal Smooth Muscle rectum
43 chr19:40590600-40593200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
44 chr19:40590600-40594600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr19:40590600-40594800 Weak transcription NHEK skin
46 chr19:40590600-40595200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr19:40590600-40595200 Weak transcription Brain Anterior Caudate brain
48 chr19:40590600-40595400 Weak transcription HUES48 Cell Line embryonic stem cell
49 chr19:40590800-40594600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr19:40590800-40594600 Enhancers HepG2 liver

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Last update: Aug 31, 2015