The 2.0 version of rSNPBase

Variant report

Variant rs234317
Chromosome Location chr19:40499237-40499238
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:40477800-40501800 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr19:40478600-40501800 Weak transcription Right Atrium heart
3 chr19:40487200-40499600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
4 chr19:40487600-40501800 Weak transcription Right Ventricle heart
5 chr19:40488200-40499600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr19:40488200-40501800 Weak transcription Esophagus oesophagus
7 chr19:40488400-40501800 Weak transcription Left Ventricle heart
8 chr19:40488800-40501800 Weak transcription Rectal Smooth Muscle rectum
9 chr19:40489000-40501600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
10 chr19:40489600-40500200 Weak transcription Fetal Kidney kidney
11 chr19:40490200-40499600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr19:40490200-40499600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr19:40490200-40499800 Weak transcription Lung lung
14 chr19:40490200-40501600 Weak transcription HSMM muscle
15 chr19:40490200-40501600 Weak transcription Osteobl bone
16 chr19:40490200-40501800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr19:40490200-40501800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr19:40490200-40502400 Weak transcription Aorta Aorta
19 chr19:40490400-40499600 Weak transcription Fetal Thymus thymus
20 chr19:40490400-40501800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
21 chr19:40491000-40502200 Weak transcription Ovary ovary
22 chr19:40493000-40501800 Weak transcription Brain Angular Gyrus brain
23 chr19:40493000-40501800 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr19:40493200-40501800 Weak transcription Placenta Amnion Placenta Amnion
25 chr19:40493400-40499600 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr19:40493400-40499800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr19:40493400-40501800 Weak transcription Psoas Muscle Psoas
28 chr19:40493600-40499400 Weak transcription Primary B cells from cord blood blood
29 chr19:40493600-40501000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
30 chr19:40493600-40501600 Weak transcription Duodenum Smooth Muscle Duodenum
31 chr19:40494400-40501800 Weak transcription Stomach Smooth Muscle stomach
32 chr19:40494800-40499600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr19:40495400-40501800 Weak transcription Adipose Nuclei Adipose
34 chr19:40495600-40501800 Weak transcription HSMMtube muscle
35 chr19:40496200-40501800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr19:40496600-40502200 Weak transcription Fetal Muscle Trunk muscle
37 chr19:40497600-40500600 Weak transcription Primary T helper naive cells from peripheral blood blood
38 chr19:40497600-40501400 Weak transcription Pancreas Pancrea
39 chr19:40497600-40501600 Weak transcription Primary T killer naive cells fromperipheralblood blood
40 chr19:40497800-40499400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
41 chr19:40498000-40499600 Weak transcription Duodenum Mucosa Duodenum
42 chr19:40498000-40501000 ZNF genes & repeats A549 lung
43 chr19:40498200-40500000 Strong transcription Primary T cells from cord blood blood
44 chr19:40498600-40499600 Weak transcription Placenta Placenta
45 chr19:40498800-40500200 ZNF genes & repeats Primary T helper naive cells fromperipheralblood blood
46 chr19:40498800-40500200 ZNF genes & repeats Fetal Stomach stomach
47 chr19:40498800-40501000 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr19:40498800-40501800 Weak transcription Pancreatic Islets Pancreatic Islet
49 chr19:40499000-40499400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
50 chr19:40499000-40500200 ZNF genes & repeats Fetal Intestine Small intestine

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Last update: Aug 31, 2015