The 2.0 version of rSNPBase

Variant report

Variant rs7258506
Chromosome Location chr19:40591027-40591028
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:40579600-40591200 Strong transcription Fetal Thymus thymus
2 chr19:40581800-40595600 Weak transcription Stomach Mucosa stomach
3 chr19:40582000-40591200 Strong transcription Rectal Mucosa Donor 29 rectum
4 chr19:40583000-40595400 Weak transcription NHLF lung
5 chr19:40583200-40595400 Weak transcription H9 Cell Line embryonic stem cell
6 chr19:40583200-40595400 Weak transcription Lung lung
7 chr19:40583200-40595400 Weak transcription Psoas Muscle Psoas
8 chr19:40583200-40595400 Weak transcription NH-A brain
9 chr19:40583200-40596000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
10 chr19:40583400-40595400 Weak transcription Small Intestine intestine
11 chr19:40583800-40595400 Weak transcription Right Ventricle heart
12 chr19:40584600-40591200 Strong transcription Duodenum Mucosa Duodenum
13 chr19:40585000-40591200 Strong transcription Primary T cells fromperipheralblood blood
14 chr19:40585000-40591200 Strong transcription Primary T helper naive cells fromperipheralblood blood
15 chr19:40585200-40591200 Strong transcription Fetal Intestine Large intestine
16 chr19:40585400-40591200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
17 chr19:40585600-40591400 Strong transcription Primary T regulatory cells fromperipheralblood blood
18 chr19:40585800-40591200 Strong transcription Primary T cells from cord blood blood
19 chr19:40586000-40591200 Strong transcription Stomach Smooth Muscle stomach
20 chr19:40586200-40591200 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr19:40586200-40591200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr19:40586200-40591200 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr19:40586400-40591200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
24 chr19:40586400-40591200 Strong transcription Aorta Aorta
25 chr19:40586400-40591200 Strong transcription Colonic Mucosa Colon
26 chr19:40586400-40591200 Strong transcription Sigmoid Colon Sigmoid Colon
27 chr19:40586600-40591200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr19:40586600-40591200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr19:40586600-40591200 Strong transcription Breast Myoepithelial Primary Cells Breast
30 chr19:40586600-40591200 Strong transcription Primary T helper cells fromperipheralblood blood
31 chr19:40586600-40591200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
32 chr19:40586600-40591200 Strong transcription Duodenum Smooth Muscle Duodenum
33 chr19:40586600-40591200 Strong transcription A549 lung
34 chr19:40586600-40591200 Strong transcription Dnd41 blood
35 chr19:40586600-40594800 Weak transcription Fetal Heart heart
36 chr19:40586600-40595400 Weak transcription iPS-15b Cell Line embryonic stem cell
37 chr19:40586600-40595400 Weak transcription iPS-18 Cell Line embryonic stem cell
38 chr19:40586800-40591200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
39 chr19:40586800-40591400 Strong transcription GM12878-XiMat blood
40 chr19:40586800-40594600 Weak transcription Fetal Brain Male brain
41 chr19:40586800-40595400 Weak transcription Hela-S3 cervix
42 chr19:40587000-40591200 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr19:40587000-40591200 Strong transcription Fetal Stomach stomach
44 chr19:40587000-40591200 Strong transcription Thymus Thymus
45 chr19:40587200-40591200 Strong transcription Brain Cingulate Gyrus brain
46 chr19:40587200-40591200 Strong transcription Spleen Spleen
47 chr19:40587200-40595400 Weak transcription Placenta Placenta
48 chr19:40587400-40591200 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
49 chr19:40587400-40591200 Strong transcription Fetal Intestine Small intestine
50 chr19:40588000-40591200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015