The 2.0 version of rSNPBase

Variant report

Variant rs10417013
Chromosome Location chr19:40489998-40489999
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:105 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:40477800-40501800 Weak transcription ES-WA7 Cell Line embryonic stem cell
2 chr19:40478400-40490000 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr19:40478400-40490400 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr19:40478400-40491000 Strong transcription Rectal Mucosa Donor 29 rectum
5 chr19:40478400-40491200 Weak transcription Fetal Heart heart
6 chr19:40478600-40490000 Strong transcription Skeletal Muscle Female skeletal muscle
7 chr19:40478600-40501800 Weak transcription Right Atrium heart
8 chr19:40479000-40490200 Strong transcription HSMMtube muscle
9 chr19:40479200-40490200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr19:40479600-40490200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr19:40481800-40490800 Weak transcription Stomach Mucosa stomach
12 chr19:40482800-40490000 Strong transcription Primary T cells fromperipheralblood blood
13 chr19:40482800-40490000 Strong transcription Brain Hippocampus Middle brain
14 chr19:40482800-40490200 Strong transcription Osteobl bone
15 chr19:40483200-40490000 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr19:40483200-40490000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr19:40483200-40490400 Strong transcription Fetal Thymus thymus
18 chr19:40485400-40490000 Strong transcription Skeletal Muscle Male skeletal muscle
19 chr19:40485800-40494600 ZNF genes & repeats A549 lung
20 chr19:40486800-40490800 Weak transcription Primary T killer naive cells fromperipheralblood blood
21 chr19:40486800-40492800 Weak transcription Placenta Amnion Placenta Amnion
22 chr19:40487200-40490000 ZNF genes & repeats GM12878-XiMat blood
23 chr19:40487200-40499600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
24 chr19:40487600-40490000 Weak transcription Small Intestine intestine
25 chr19:40487600-40492200 Weak transcription Fetal Brain Male brain
26 chr19:40487600-40501800 Weak transcription Right Ventricle heart
27 chr19:40487800-40490000 Weak transcription Aorta Aorta
28 chr19:40488000-40490200 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr19:40488200-40490200 Weak transcription Ovary ovary
30 chr19:40488200-40492400 Weak transcription Brain Inferior Temporal Lobe brain
31 chr19:40488200-40497000 Weak transcription Pancreas Pancrea
32 chr19:40488200-40497400 Weak transcription Gastric stomach
33 chr19:40488200-40499600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
34 chr19:40488200-40501800 Weak transcription Esophagus oesophagus
35 chr19:40488400-40490200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr19:40488400-40490400 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr19:40488400-40492600 Weak transcription Brain Angular Gyrus brain
38 chr19:40488400-40501800 Weak transcription Left Ventricle heart
39 chr19:40488600-40490200 Weak transcription Stomach Smooth Muscle stomach
40 chr19:40488600-40491000 Weak transcription Hela-S3 cervix
41 chr19:40488600-40491200 Weak transcription NHLF lung
42 chr19:40488800-40490000 Weak transcription Colonic Mucosa Colon
43 chr19:40488800-40490200 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
44 chr19:40488800-40490200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
45 chr19:40488800-40490200 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
46 chr19:40488800-40490200 Weak transcription Rectal Mucosa Donor 31 rectum
47 chr19:40488800-40501800 Weak transcription Rectal Smooth Muscle rectum
48 chr19:40489000-40490200 Weak transcription iPS-15b Cell Line embryonic stem cell
49 chr19:40489000-40501600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
50 chr19:40489200-40490000 ZNF genes & repeats ES-I3 Cell Line embryonic stem cell

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Last update: Aug 31, 2015