The 2.0 version of rSNPBase

Variant report

Variant rs234306
Chromosome Location chr19:40516486-40516487
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:100 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:40503600-40519200 Weak transcription Small Intestine intestine
2 chr19:40504000-40517600 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr19:40504000-40519600 Weak transcription Fetal Brain Male brain
4 chr19:40504000-40519600 Weak transcription Hela-S3 cervix
5 chr19:40504000-40533800 Weak transcription Placenta Amnion Placenta Amnion
6 chr19:40511400-40517400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr19:40511400-40518000 Strong transcription Brain Hippocampus Middle brain
8 chr19:40511600-40522000 ZNF genes & repeats A549 lung
9 chr19:40511800-40518000 Strong transcription Colon Smooth Muscle Colon
10 chr19:40512000-40517600 Strong transcription Skeletal Muscle Female skeletal muscle
11 chr19:40512000-40517800 Strong transcription Primary B cells from cord blood blood
12 chr19:40512000-40519200 Strong transcription Brain Inferior Temporal Lobe brain
13 chr19:40512000-40527200 ZNF genes & repeats Liver Liver
14 chr19:40512200-40516600 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
15 chr19:40512200-40516600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
16 chr19:40512200-40517600 Strong transcription Duodenum Smooth Muscle Duodenum
17 chr19:40512200-40517800 Strong transcription Primary B cells from peripheral blood blood
18 chr19:40512200-40518600 Strong transcription Brain Anterior Caudate brain
19 chr19:40512400-40516600 Strong transcription Fetal Lung lung
20 chr19:40512600-40517400 Weak transcription NH-A brain
21 chr19:40512600-40518000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
22 chr19:40512600-40519600 Weak transcription Colonic Mucosa Colon
23 chr19:40512800-40517600 Weak transcription HUVEC blood vessel
24 chr19:40512800-40518200 Strong transcription Fetal Thymus thymus
25 chr19:40512800-40518200 Strong transcription Left Ventricle heart
26 chr19:40513000-40516600 Strong transcription Stomach Smooth Muscle stomach
27 chr19:40513000-40518400 Strong transcription Skeletal Muscle Male skeletal muscle
28 chr19:40513200-40516600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
29 chr19:40513200-40516600 ZNF genes & repeats GM12878-XiMat blood
30 chr19:40513200-40517600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
31 chr19:40513400-40518800 Strong transcription Brain Cingulate Gyrus brain
32 chr19:40513400-40521800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr19:40513600-40522200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr19:40513800-40516600 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr19:40513800-40516600 Strong transcription Cortex derived primary cultured neurospheres brain
36 chr19:40513800-40518000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
37 chr19:40513800-40518400 Strong transcription Brain Angular Gyrus brain
38 chr19:40514000-40523000 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
39 chr19:40514400-40516600 ZNF genes & repeats Primary hematopoietic stem cells blood
40 chr19:40514400-40517600 Weak transcription Psoas Muscle Psoas
41 chr19:40514800-40517600 Strong transcription Adipose Nuclei Adipose
42 chr19:40514800-40517600 Weak transcription Gastric stomach
43 chr19:40514800-40517600 Weak transcription Spleen Spleen
44 chr19:40514800-40517800 Weak transcription Fetal Muscle Trunk muscle
45 chr19:40514800-40519600 Weak transcription Right Ventricle heart
46 chr19:40515000-40517600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
47 chr19:40515000-40517800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
48 chr19:40515000-40518200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr19:40515000-40519000 Weak transcription HepG2 liver
50 chr19:40515000-40519400 Weak transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015