Variant report

Variant	rs73547652
Chromosome Location	chr19:40524690-40524691
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr19:40524310-40528109	PANC-1	pancreas:	n/a	n/a
2	POLR2A	chr19:40524238-40526515	MCF10A-Er-Src	breast:	n/a	n/a
3	REST	chr19:40524150-40527833	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr19:40524393-40524994	HepG2	liver:	n/a	n/a
5	POLR2A	chr19:40524444-40524733	K562	blood:	n/a	n/a
6	POLR2A	chr19:40517320-40525363	PANC-1	pancreas:	n/a	n/a

Variant related genes	Relation type
ENSG00000268166	TF binding region

Extended variants
information (count: 196 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs1007628	0.95[ASN][1000 genomes]
rs10406738	0.92[ASN][1000 genomes]
rs10417013	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10417043	0.97[ASN][1000 genomes]
rs10418196	0.96[ASN][1000 genomes]
rs11542840	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1327185	0.83[EUR][1000 genomes]
rs1327187	0.83[EUR][1000 genomes]
rs1327188	0.83[EUR][1000 genomes]
rs1327189	0.83[EUR][1000 genomes]
rs1327190	0.83[EUR][1000 genomes]
rs1327191	0.83[EUR][1000 genomes]
rs1327192	0.83[EUR][1000 genomes]
rs1327193	0.83[EUR][1000 genomes]
rs13344062	0.84[ASN][1000 genomes]
rs163213	0.89[ASN][1000 genomes]
rs16973950	0.92[ASN][1000 genomes]
rs170901	1.00[ASN][1000 genomes]
rs173061	0.97[ASN][1000 genomes]
rs17796769	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17796901	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17797100	0.83[EUR][1000 genomes]
rs183504	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1854098	0.83[EUR][1000 genomes]
rs186801	0.97[ASN][1000 genomes]
rs186815	0.84[ASN][1000 genomes]
rs1926931	0.90[ASN][1000 genomes]
rs1926932	0.90[ASN][1000 genomes]
rs1926933	0.90[ASN][1000 genomes]
rs1926934	0.90[ASN][1000 genomes]
rs1998931	0.83[EUR][1000 genomes]
rs2111543	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2111544	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2231737	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs234301	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs234302	1.00[ASN][1000 genomes]
rs234303	0.94[ASN][1000 genomes]
rs234304	0.92[ASN][1000 genomes]
rs234306	0.92[ASN][1000 genomes]
rs234308	0.94[ASN][1000 genomes]
rs234309	0.97[ASN][1000 genomes]
rs234310	0.92[ASN][1000 genomes]
rs234313	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs234314	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs234315	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs234317	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs234318	0.92[ASN][1000 genomes]
rs234323	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs234324	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs234325	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs234326	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs234328	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs234341	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs234343	0.91[ASN][1000 genomes]
rs234352	0.94[ASN][1000 genomes]
rs234353	1.00[ASN][1000 genomes]
rs234355	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs234356	0.94[ASN][1000 genomes]
rs234357	1.00[ASN][1000 genomes]
rs234360	0.92[ASN][1000 genomes]
rs234361	0.92[ASN][1000 genomes]
rs234370	0.92[ASN][1000 genomes]
rs234371	0.92[ASN][1000 genomes]
rs234374	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2542303	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2569639	0.83[EUR][1000 genomes]
rs2569640	0.83[EUR][1000 genomes]
rs2569642	0.83[EUR][1000 genomes]
rs2569643	0.83[EUR][1000 genomes]
rs2569644	0.83[EUR][1000 genomes]
rs2569645	0.83[EUR][1000 genomes]
rs2569648	0.83[EUR][1000 genomes]
rs2569649	0.83[EUR][1000 genomes]
rs2767592	0.83[EUR][1000 genomes]
rs2767593	0.83[EUR][1000 genomes]
rs2767594	0.83[EUR][1000 genomes]
rs2767595	0.83[EUR][1000 genomes]
rs2767596	0.83[EUR][1000 genomes]
rs2767597	0.83[EUR][1000 genomes]
rs2767598	0.83[EUR][1000 genomes]
rs2767601	0.83[EUR][1000 genomes]
rs2767603	0.83[EUR][1000 genomes]
rs2767604	0.83[EUR][1000 genomes]
rs2767605	0.83[EUR][1000 genomes]
rs2767606	0.83[EUR][1000 genomes]
rs2767607	0.83[EUR][1000 genomes]
rs2767608	0.83[EUR][1000 genomes]
rs2819955	0.83[EUR][1000 genomes]
rs2819956	0.97[ASN][1000 genomes]
rs2819958	0.83[EUR][1000 genomes]
rs28366011	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2915972	0.83[EUR][1000 genomes]
rs2970102	0.83[EUR][1000 genomes]
rs2986595	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3000956	0.89[ASN][1000 genomes]
rs337779	0.89[ASN][1000 genomes]
rs337792	0.83[EUR][1000 genomes]
rs337793	0.83[EUR][1000 genomes]
rs337794	0.83[EUR][1000 genomes]
rs337798	0.86[ASN][1000 genomes]
rs337799	0.86[ASN][1000 genomes]
rs337800	0.85[ASN][1000 genomes]
rs337801	0.82[ASN][1000 genomes]
rs365055	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs371500	0.92[ASN][1000 genomes]
rs372599	0.96[ASN][1000 genomes]
rs3760920	0.81[ASN][1000 genomes]
rs387202	0.97[ASN][1000 genomes]
rs3887029	0.89[ASN][1000 genomes]
rs392958	1.00[ASN][1000 genomes]
rs3930885	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs404754	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs416283	0.89[ASN][1000 genomes]
rs420579	0.89[ASN][1000 genomes]
rs421533	0.89[ASN][1000 genomes]
rs423545	0.95[ASN][1000 genomes]
rs424353	0.92[ASN][1000 genomes]
rs426950	0.89[ASN][1000 genomes]
rs4577216	0.95[ASN][1000 genomes]
rs459091	0.89[ASN][1000 genomes]
rs57219798	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57880771	0.90[ASN][1000 genomes]
rs57900299	0.91[ASN][1000 genomes]
rs58210425	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58284735	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58395013	0.92[ASN][1000 genomes]
rs58440570	0.90[ASN][1000 genomes]
rs58844095	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58941665	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59502139	0.92[ASN][1000 genomes]
rs59925663	0.96[ASN][1000 genomes]
rs60080503	0.91[ASN][1000 genomes]
rs60449727	0.91[ASN][1000 genomes]
rs60887294	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61236589	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61385499	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs615215	0.92[ASN][1000 genomes]
rs7247527	0.92[ASN][1000 genomes]
rs7257747	0.91[ASN][1000 genomes]
rs7258202	0.91[ASN][1000 genomes]
rs7258506	0.92[ASN][1000 genomes]
rs7258627	0.92[ASN][1000 genomes]
rs7258778	0.91[ASN][1000 genomes]
rs7258974	0.90[ASN][1000 genomes]
rs7259855	0.90[ASN][1000 genomes]
rs7260378	0.90[ASN][1000 genomes]
rs73543974	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73543979	0.93[AFR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73544000	0.96[AFR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73545909	0.96[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73545911	0.97[ASN][1000 genomes]
rs73545934	0.97[ASN][1000 genomes]
rs73545936	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73545938	0.98[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73545945	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73545950	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73545955	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73545975	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73546001	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73546002	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73547618	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73547620	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73547638	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73547656	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547663	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547676	1.00[ASN][1000 genomes]
rs73547677	1.00[ASN][1000 genomes]
rs73547696	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73547702	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73549804	0.92[ASN][1000 genomes]
rs73549810	0.92[ASN][1000 genomes]
rs73549811	0.92[ASN][1000 genomes]
rs73549820	0.92[ASN][1000 genomes]
rs73549821	0.86[ASN][1000 genomes]
rs73549825	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73549826	0.90[ASN][1000 genomes]
rs73549829	0.90[ASN][1000 genomes]
rs73549833	0.90[ASN][1000 genomes]
rs73549835	0.90[ASN][1000 genomes]
rs73549836	0.90[ASN][1000 genomes]
rs73549877	0.83[EUR][1000 genomes]
rs73551642	0.83[EUR][1000 genomes]
rs73551661	0.83[EUR][1000 genomes]
rs73551662	0.83[EUR][1000 genomes]
rs73551663	0.83[EUR][1000 genomes]
rs73551668	0.83[EUR][1000 genomes]
rs73551674	0.83[EUR][1000 genomes]
rs73551675	0.83[EUR][1000 genomes]
rs73551681	0.83[EUR][1000 genomes]
rs73551691	0.83[EUR][1000 genomes]
rs8105066	0.92[ASN][1000 genomes]
rs8106032	0.92[ASN][1000 genomes]
rs8108793	0.89[ASN][1000 genomes]
rs9783938	0.87[ASN][1000 genomes]
rs9917073	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917321	chr19:40403192-40694875	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:40504000-40533800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:40512000-40527200	ZNF genes & repeats	Liver	Liver
3	chr19:40521200-40540800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr19:40523600-40524800	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr19:40524400-40524800	ZNF genes & repeats	Aorta	Aorta
6	chr19:40524400-40525000	ZNF genes & repeats	Brain Anterior Caudate	brain
7	chr19:40524400-40525000	ZNF genes & repeats	A549	lung
8	chr19:40524600-40529400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links