The 2.0 version of rSNPBase

Variant report

Variant rs58395013
Chromosome Location chr19:40586346-40586347
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:118 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:40578600-40586600 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
2 chr19:40578600-40586600 ZNF genes & repeats Liver Liver
3 chr19:40578600-40586600 ZNF genes & repeats A549 lung
4 chr19:40578600-40586800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
5 chr19:40578600-40590400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
6 chr19:40578800-40586600 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
7 chr19:40578800-40587200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr19:40579000-40586600 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
9 chr19:40579000-40587000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
10 chr19:40579000-40587000 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
11 chr19:40579200-40586600 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
12 chr19:40579200-40586600 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
13 chr19:40579200-40586800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr19:40579200-40586800 ZNF genes & repeats GM12878-XiMat blood
15 chr19:40579200-40589600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr19:40579400-40590400 Strong transcription Cortex derived primary cultured neurospheres brain
17 chr19:40579600-40586600 ZNF genes & repeats Primary B cells from peripheral blood blood
18 chr19:40579600-40590800 Strong transcription Skeletal Muscle Female skeletal muscle
19 chr19:40579600-40591200 Strong transcription Fetal Thymus thymus
20 chr19:40579800-40586800 Strong transcription Fetal Brain Male brain
21 chr19:40580000-40586600 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
22 chr19:40580600-40591000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
23 chr19:40581600-40586600 ZNF genes & repeats Fetal Brain Female brain
24 chr19:40581800-40587000 Strong transcription Primary T helper memory cells from peripheral blood 2 blood
25 chr19:40581800-40595600 Weak transcription Stomach Mucosa stomach
26 chr19:40582000-40586400 Weak transcription iPS-15b Cell Line embryonic stem cell
27 chr19:40582000-40586600 ZNF genes & repeats Dnd41 blood
28 chr19:40582000-40591200 Strong transcription Rectal Mucosa Donor 29 rectum
29 chr19:40582200-40588800 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
30 chr19:40583000-40595400 Weak transcription NHLF lung
31 chr19:40583200-40587200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
32 chr19:40583200-40587400 Weak transcription HUVEC blood vessel
33 chr19:40583200-40588400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr19:40583200-40588800 Weak transcription Esophagus oesophagus
35 chr19:40583200-40590800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
36 chr19:40583200-40595400 Weak transcription H9 Cell Line embryonic stem cell
37 chr19:40583200-40595400 Weak transcription Lung lung
38 chr19:40583200-40595400 Weak transcription Psoas Muscle Psoas
39 chr19:40583200-40595400 Weak transcription NH-A brain
40 chr19:40583200-40596000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
41 chr19:40583400-40586400 Weak transcription Brain Substantia Nigra brain
42 chr19:40583400-40586400 Weak transcription Placenta Placenta
43 chr19:40583400-40587200 Weak transcription Gastric stomach
44 chr19:40583400-40587800 Strong transcription Rectal Smooth Muscle rectum
45 chr19:40583400-40588600 Weak transcription Pancreas Pancrea
46 chr19:40583400-40595400 Weak transcription Small Intestine intestine
47 chr19:40583600-40586400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr19:40583600-40586400 Weak transcription Aorta Aorta
49 chr19:40583600-40586400 Weak transcription Colonic Mucosa Colon
50 chr19:40583600-40586400 Weak transcription Left Ventricle heart

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Last update: Aug 31, 2015