The 2.0 version of rSNPBase

Variant report

Variant rs59502139
Chromosome Location chr19:40587845-40587846
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:40578600-40590400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
2 chr19:40579200-40589600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
3 chr19:40579400-40590400 Strong transcription Cortex derived primary cultured neurospheres brain
4 chr19:40579600-40590800 Strong transcription Skeletal Muscle Female skeletal muscle
5 chr19:40579600-40591200 Strong transcription Fetal Thymus thymus
6 chr19:40580600-40591000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
7 chr19:40581800-40595600 Weak transcription Stomach Mucosa stomach
8 chr19:40582000-40591200 Strong transcription Rectal Mucosa Donor 29 rectum
9 chr19:40582200-40588800 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
10 chr19:40583000-40595400 Weak transcription NHLF lung
11 chr19:40583200-40588400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr19:40583200-40588800 Weak transcription Esophagus oesophagus
13 chr19:40583200-40590800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr19:40583200-40595400 Weak transcription H9 Cell Line embryonic stem cell
15 chr19:40583200-40595400 Weak transcription Lung lung
16 chr19:40583200-40595400 Weak transcription Psoas Muscle Psoas
17 chr19:40583200-40595400 Weak transcription NH-A brain
18 chr19:40583200-40596000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
19 chr19:40583400-40588600 Weak transcription Pancreas Pancrea
20 chr19:40583400-40595400 Weak transcription Small Intestine intestine
21 chr19:40583800-40590800 Strong transcription Fetal Lung lung
22 chr19:40583800-40595400 Weak transcription Right Ventricle heart
23 chr19:40584400-40589600 Strong transcription K562 blood
24 chr19:40584600-40590800 Strong transcription Primary T helper 17 cells PMA-I stimulated --
25 chr19:40584600-40591200 Strong transcription Duodenum Mucosa Duodenum
26 chr19:40584800-40588800 Weak transcription Colon Smooth Muscle Colon
27 chr19:40584800-40591000 Strong transcription Primary T killer memory cells from peripheral blood blood
28 chr19:40585000-40589600 Strong transcription Placenta Amnion Placenta Amnion
29 chr19:40585000-40591200 Strong transcription Primary T cells fromperipheralblood blood
30 chr19:40585000-40591200 Strong transcription Primary T helper naive cells fromperipheralblood blood
31 chr19:40585200-40590200 Strong transcription Muscle Satellite Cultured Cells --
32 chr19:40585200-40590600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr19:40585200-40591000 Strong transcription Primary T helper naive cells from peripheral blood blood
34 chr19:40585200-40591000 Strong transcription Brain Germinal Matrix brain
35 chr19:40585200-40591200 Strong transcription Fetal Intestine Large intestine
36 chr19:40585400-40591000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr19:40585400-40591000 Strong transcription Primary T killer naive cells fromperipheralblood blood
38 chr19:40585400-40591200 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
39 chr19:40585600-40590200 Weak transcription NHEK skin
40 chr19:40585600-40590600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
41 chr19:40585600-40591000 Strong transcription Adipose Nuclei Adipose
42 chr19:40585600-40591400 Strong transcription Primary T regulatory cells fromperipheralblood blood
43 chr19:40585800-40589800 Strong transcription Rectal Mucosa Donor 31 rectum
44 chr19:40585800-40591200 Strong transcription Primary T cells from cord blood blood
45 chr19:40586000-40589400 Strong transcription Osteobl bone
46 chr19:40586000-40589600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell
47 chr19:40586000-40589600 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
48 chr19:40586000-40590600 Strong transcription Brain Anterior Caudate brain
49 chr19:40586000-40591200 Strong transcription Stomach Smooth Muscle stomach
50 chr19:40586200-40589800 Strong transcription HepG2 liver

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Last update: Aug 31, 2015