The 2.0 version of rSNPBase

Variant report

Variant rs73549811
Chromosome Location chr19:40584773-40584774
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:40578600-40586200 ZNF genes & repeats Primary T helper cells PMA-I stimulated --
2 chr19:40578600-40586600 ZNF genes & repeats Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
3 chr19:40578600-40586600 ZNF genes & repeats Liver Liver
4 chr19:40578600-40586600 ZNF genes & repeats A549 lung
5 chr19:40578600-40586800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr19:40578600-40590400 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr19:40578800-40586600 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
8 chr19:40578800-40587200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
9 chr19:40579000-40586600 ZNF genes & repeats Monocytes-CD14+_RO01746 blood
10 chr19:40579000-40587000 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr19:40579000-40587000 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
12 chr19:40579200-40585000 ZNF genes & repeats Primary B cells from cord blood blood
13 chr19:40579200-40585600 ZNF genes & repeats Primary T regulatory cells fromperipheralblood blood
14 chr19:40579200-40585600 ZNF genes & repeats Adipose Nuclei Adipose
15 chr19:40579200-40585800 ZNF genes & repeats Primary T cells from cord blood blood
16 chr19:40579200-40586600 ZNF genes & repeats Primary T helper cells fromperipheralblood blood
17 chr19:40579200-40586600 ZNF genes & repeats Duodenum Smooth Muscle Duodenum
18 chr19:40579200-40586800 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr19:40579200-40586800 ZNF genes & repeats GM12878-XiMat blood
20 chr19:40579200-40589600 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
21 chr19:40579400-40585000 ZNF genes & repeats Primary T cells fromperipheralblood blood
22 chr19:40579400-40585400 Strong transcription HepG2 liver
23 chr19:40579400-40590400 Strong transcription Cortex derived primary cultured neurospheres brain
24 chr19:40579600-40586600 ZNF genes & repeats Primary B cells from peripheral blood blood
25 chr19:40579600-40590800 Strong transcription Skeletal Muscle Female skeletal muscle
26 chr19:40579600-40591200 Strong transcription Fetal Thymus thymus
27 chr19:40579800-40584800 ZNF genes & repeats Fetal Kidney kidney
28 chr19:40579800-40585000 ZNF genes & repeats Primary T helper naive cells fromperipheralblood blood
29 chr19:40579800-40586800 Strong transcription Fetal Brain Male brain
30 chr19:40580000-40584800 ZNF genes & repeats Primary mononuclear cells fromperipheralblood Blood
31 chr19:40580000-40586600 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
32 chr19:40580600-40591000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
33 chr19:40581600-40586600 ZNF genes & repeats Fetal Brain Female brain
34 chr19:40581800-40586200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
35 chr19:40581800-40587000 Strong transcription Primary T helper memory cells from peripheral blood 2 blood
36 chr19:40581800-40595600 Weak transcription Stomach Mucosa stomach
37 chr19:40582000-40585000 ZNF genes & repeats Fetal Intestine Large intestine
38 chr19:40582000-40586400 Weak transcription iPS-15b Cell Line embryonic stem cell
39 chr19:40582000-40586600 ZNF genes & repeats Dnd41 blood
40 chr19:40582000-40591200 Strong transcription Rectal Mucosa Donor 29 rectum
41 chr19:40582200-40588800 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
42 chr19:40582400-40585000 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
43 chr19:40583000-40586200 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
44 chr19:40583000-40595400 Weak transcription NHLF lung
45 chr19:40583200-40584800 Strong transcription Foreskin Melanocyte Primary Cells skin01 Skin
46 chr19:40583200-40584800 Strong transcription Fetal Muscle Trunk muscle
47 chr19:40583200-40584800 Weak transcription Hela-S3 cervix
48 chr19:40583200-40584800 Weak transcription HMEC breast
49 chr19:40583200-40586200 Weak transcription iPS-18 Cell Line embryonic stem cell
50 chr19:40583200-40587200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015