The 2.0 version of rSNPBase

Variant report

Variant rs73546002
Chromosome Location chr19:40504710-40504711
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:40503000-40504800 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
2 chr19:40503600-40505000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
3 chr19:40503600-40507000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr19:40503600-40507400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr19:40503600-40511800 Weak transcription Ovary ovary
6 chr19:40503600-40511800 Weak transcription Spleen Spleen
7 chr19:40503600-40512000 Weak transcription Esophagus oesophagus
8 chr19:40503600-40512400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
9 chr19:40503600-40513000 Weak transcription Placenta Placenta
10 chr19:40503600-40514000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr19:40503600-40519200 Weak transcription Small Intestine intestine
12 chr19:40503800-40504800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
13 chr19:40503800-40505200 Enhancers HSMM muscle
14 chr19:40503800-40505600 Weak transcription Fetal Muscle Trunk muscle
15 chr19:40503800-40505800 Weak transcription Duodenum Smooth Muscle Duodenum
16 chr19:40503800-40506800 Weak transcription H1 Cell Line embryonic stem cell
17 chr19:40503800-40511000 Weak transcription Right Atrium heart
18 chr19:40503800-40511400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
19 chr19:40503800-40512000 Weak transcription Primary monocytes fromperipheralblood blood
20 chr19:40503800-40512000 Weak transcription Lung lung
21 chr19:40503800-40512200 Weak transcription Aorta Aorta
22 chr19:40503800-40512200 Weak transcription Gastric stomach
23 chr19:40503800-40512400 Weak transcription Primary T regulatory cells fromperipheralblood blood
24 chr19:40503800-40512400 Weak transcription Brain Angular Gyrus brain
25 chr19:40503800-40512800 Weak transcription Brain Germinal Matrix brain
26 chr19:40503800-40513000 Weak transcription Primary T killer naive cells fromperipheralblood blood
27 chr19:40503800-40513000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
28 chr19:40503800-40513200 Weak transcription Fetal Intestine Large intestine
29 chr19:40503800-40513400 Weak transcription Primary neutrophils fromperipheralblood blood
30 chr19:40503800-40513400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
31 chr19:40503800-40513400 Weak transcription Brain Cingulate Gyrus brain
32 chr19:40503800-40513800 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr19:40503800-40513800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
34 chr19:40503800-40513800 Weak transcription Fetal Stomach stomach
35 chr19:40503800-40514000 Weak transcription Primary T helper naive cells from peripheral blood blood
36 chr19:40503800-40514000 Weak transcription Rectal Smooth Muscle rectum
37 chr19:40503800-40514400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr19:40503800-40514600 Weak transcription ES-I3 Cell Line embryonic stem cell
39 chr19:40503800-40514600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr19:40503800-40516000 Weak transcription Fetal Intestine Small intestine
41 chr19:40504000-40504800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr19:40504000-40505200 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr19:40504000-40505400 Weak transcription Brain Anterior Caudate brain
44 chr19:40504000-40505800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr19:40504000-40505800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
46 chr19:40504000-40506000 Weak transcription Cortex derived primary cultured neurospheres brain
47 chr19:40504000-40506000 Weak transcription A549 lung
48 chr19:40504000-40506600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
49 chr19:40504000-40506600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr19:40504000-40506600 Weak transcription Liver Liver

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Last update: Aug 31, 2015