Variant report

Variant	rs28634089
Chromosome Location	chr16:64987147-64987148
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28586891	0.81[AFR][1000 genomes]
rs9923368	0.84[AFR][1000 genomes]
rs9926830	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9926911	0.84[AFR][1000 genomes]
rs9930183	0.81[AFR][1000 genomes]
rs9934467	0.87[AMR][1000 genomes]
rs9937279	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9938583	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv572901	chr16:64964233-64990187	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64979000-64998000	Weak transcription	HMEC	breast
2	chr16:64980000-65005200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:64980800-64991200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:64983000-65003200	Weak transcription	Brain Substantia Nigra	brain
5	chr16:64983200-65004400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr16:64984400-64987800	Weak transcription	Fetal Kidney	kidney
7	chr16:64984400-65002400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr16:64984600-65002200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr16:64984800-65004600	Weak transcription	Fetal Brain Female	brain
10	chr16:64984800-65005400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr16:64985000-64991800	Weak transcription	Lung	lung
12	chr16:64985000-65002200	Weak transcription	Brain Anterior Caudate	brain
13	chr16:64985000-65002400	Weak transcription	Brain Angular Gyrus	brain
14	chr16:64985000-65004400	Weak transcription	Fetal Intestine Large	intestine
15	chr16:64985000-65005200	Weak transcription	Brain Germinal Matrix	brain
16	chr16:64985000-65005800	Weak transcription	Aorta	Aorta
17	chr16:64985000-65011000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr16:64985200-65004400	Weak transcription	Fetal Brain Male	brain
19	chr16:64985400-64987200	Weak transcription	Ovary	ovary
20	chr16:64985400-64994200	Weak transcription	Fetal Muscle Leg	muscle
21	chr16:64985400-65004200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr16:64985400-65004400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr16:64985400-65005800	Weak transcription	Spleen	Spleen
24	chr16:64985400-65015200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr16:64985600-64987400	Enhancers	Muscle Satellite Cultured Cells	--
26	chr16:64985600-64987800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr16:64985800-64987400	Enhancers	HSMMtube	muscle
28	chr16:64985800-64987400	Enhancers	NHDF-Ad	bronchial
29	chr16:64986000-64987400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr16:64986000-64988400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr16:64986000-64991000	Weak transcription	Colon Smooth Muscle	Colon
32	chr16:64986000-64991000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr16:64986200-64987200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr16:64986200-64987800	Enhancers	Osteobl	bone
35	chr16:64986200-65003000	Weak transcription	Brain Hippocampus Middle	brain
36	chr16:64986200-65004200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr16:64986400-64988200	Weak transcription	Fetal Lung	lung
38	chr16:64986400-64988400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr16:64986400-64991000	Weak transcription	Stomach Smooth Muscle	stomach
40	chr16:64986400-65004000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr16:64986400-65004200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr16:64986800-64988400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr16:64986800-64988400	Weak transcription	Fetal Stomach	stomach
44	chr16:64986800-64989800	Weak transcription	NH-A	brain
45	chr16:64987000-64990200	Weak transcription	HSMM	muscle
46	chr16:64987000-65002600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr16:64987000-65003200	Weak transcription	NHLF	lung

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