Variant report

Variant	rs9923368
Chromosome Location	chr16:65028422-65028423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13331791	0.83[AMR][1000 genomes]
rs1520235	0.91[YRI][hapmap]
rs28378738	0.83[AMR][1000 genomes]
rs28586891	0.80[AFR][1000 genomes]
rs28634089	0.84[AFR][1000 genomes]
rs7202828	1.00[AMR][1000 genomes]
rs9922115	1.00[YRI][hapmap]
rs9926830	0.84[AFR][1000 genomes]
rs9926911	0.82[AFR][1000 genomes]
rs9930183	0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs9934467	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9937279	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9937744	1.00[AMR][1000 genomes]
rs9940273	0.91[YRI][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64991400-65032600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr16:65003400-65034000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr16:65014200-65040200	Weak transcription	Fetal Intestine Small	intestine
5	chr16:65015000-65035000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr16:65016200-65032400	Weak transcription	Lung	lung
7	chr16:65016200-65040200	Weak transcription	Left Ventricle	heart
8	chr16:65017200-65041800	Weak transcription	Colon Smooth Muscle	Colon
9	chr16:65018000-65035600	Strong transcription	HSMM	muscle
10	chr16:65018400-65028600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr16:65018800-65035600	Strong transcription	Osteobl	bone
12	chr16:65020200-65028800	Strong transcription	NHLF	lung
13	chr16:65021000-65034200	Weak transcription	Adipose Nuclei	Adipose
14	chr16:65021200-65038200	Weak transcription	Brain Germinal Matrix	brain
15	chr16:65022000-65041200	Weak transcription	Fetal Heart	heart
16	chr16:65022200-65037200	Weak transcription	Fetal Intestine Large	intestine
17	chr16:65023400-65043200	Strong transcription	Fetal Lung	lung
18	chr16:65023600-65030000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr16:65023600-65039600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr16:65024400-65035000	Weak transcription	Brain Substantia Nigra	brain
21	chr16:65024600-65031800	Weak transcription	Brain Hippocampus Middle	brain
22	chr16:65025200-65030800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr16:65025200-65037200	Weak transcription	Spleen	Spleen
24	chr16:65025600-65029600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr16:65025800-65033000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr16:65025800-65051400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr16:65026000-65030000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr16:65026000-65030000	Weak transcription	Fetal Stomach	stomach
29	chr16:65026000-65030600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr16:65026000-65032400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr16:65026000-65035800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr16:65026000-65037800	Weak transcription	Aorta	Aorta
33	chr16:65026000-65038600	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr16:65026200-65033600	Weak transcription	Placenta	Placenta
35	chr16:65026200-65035200	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr16:65026200-65035200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr16:65026600-65035200	Weak transcription	Brain Angular Gyrus	brain
38	chr16:65026800-65030400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr16:65026800-65030600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr16:65026800-65030800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr16:65026800-65031200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr16:65026800-65035000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr16:65027000-65030600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr16:65027000-65030600	Weak transcription	Fetal Brain Male	brain
45	chr16:65027000-65031400	Weak transcription	Brain Anterior Caudate	brain
46	chr16:65027000-65036000	Weak transcription	Fetal Brain Female	brain
47	chr16:65027200-65035600	Weak transcription	HUVEC	blood vessel
48	chr16:65027400-65030200	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr16:65027600-65030600	Weak transcription	HSMMtube	muscle
50	chr16:65027800-65029000	Strong transcription	Fetal Kidney	kidney

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