Variant report

Variant	rs9930183
Chromosome Location	chr16:65069494-65069495
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28586891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28634089	0.81[AFR][1000 genomes]
rs9922115	0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs9923368	0.92[YRI][hapmap];0.80[AFR][1000 genomes]
rs9926830	0.81[AFR][1000 genomes]
rs9926911	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr16:65040600-65086000	Weak transcription	HMEC	breast
4	chr16:65041200-65072400	Weak transcription	Fetal Kidney	kidney
5	chr16:65046400-65075600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr16:65047200-65078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr16:65051000-65071200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr16:65052200-65070800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr16:65056800-65072800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr16:65058600-65104400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr16:65059800-65078400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr16:65060600-65070800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr16:65062200-65069600	Weak transcription	Fetal Muscle Leg	muscle
14	chr16:65062400-65074800	Weak transcription	Aorta	Aorta
15	chr16:65062600-65071200	Weak transcription	NHLF	lung
16	chr16:65063800-65071400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr16:65063800-65071400	Weak transcription	Fetal Brain Male	brain
18	chr16:65064000-65069800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr16:65064800-65071400	Weak transcription	Placenta	Placenta
20	chr16:65065000-65071200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr16:65065200-65070200	Weak transcription	Brain Substantia Nigra	brain
22	chr16:65065200-65071000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr16:65065800-65074800	Weak transcription	NHDF-Ad	bronchial
24	chr16:65066200-65074800	Weak transcription	HSMM	muscle
25	chr16:65066800-65069800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr16:65066800-65071200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr16:65066800-65076800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr16:65066800-65078400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr16:65067000-65071600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr16:65068200-65073000	Strong transcription	Osteobl	bone
31	chr16:65068400-65070200	Weak transcription	NH-A	brain
32	chr16:65068600-65070000	Enhancers	Spleen	Spleen
33	chr16:65068600-65071400	Strong transcription	Fetal Lung	lung
34	chr16:65068600-65072000	Enhancers	Brain Hippocampus Middle	brain
35	chr16:65068800-65069600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
36	chr16:65068800-65070000	Strong transcription	Fetal Stomach	stomach
37	chr16:65069000-65069600	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr16:65069000-65069600	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr16:65069000-65069600	Enhancers	Brain Angular Gyrus	brain
40	chr16:65069000-65069600	Enhancers	Brain Germinal Matrix	brain
41	chr16:65069000-65069800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr16:65069000-65070000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr16:65069200-65071400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr16:65069200-65072800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr16:65069200-65075200	Weak transcription	HSMMtube	muscle
46	chr16:65069400-65069800	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chr16:65069400-65069800	Weak transcription	Fetal Brain Female	brain
48	chr16:65069400-65070000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr16:65069400-65070200	Weak transcription	Ovary	ovary
50	chr16:65069400-65070800	Weak transcription	Brain Anterior Caudate	brain

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