Variant report

Variant	rs28651708
Chromosome Location	chr4:125874538-125874539
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:125866968..125869585-chr4:125874364..125876990,2	MCF-7	breast:
2	chr4:125632410..125634285-chr4:125873983..125875595,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10004548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019389	1.00[AMR][1000 genomes]
rs17008930	0.95[AFR][1000 genomes]
rs28537893	1.00[AMR][1000 genomes]
rs28560083	1.00[AMR][1000 genomes]
rs28642317	1.00[AMR][1000 genomes]
rs769310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125870400-125874800	Weak transcription	Left Ventricle	heart
2	chr4:125870600-125874600	Weak transcription	Fetal Lung	lung
3	chr4:125870800-125874600	Weak transcription	Osteobl	bone
4	chr4:125873400-125875000	Enhancers	Fetal Stomach	stomach
5	chr4:125873400-125876200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:125873600-125875400	Enhancers	Hela-S3	cervix
7	chr4:125873800-125874800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:125873800-125875000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:125873800-125875000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:125873800-125875000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:125873800-125875000	Enhancers	HMEC	breast
12	chr4:125873800-125875400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:125874000-125874600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:125874000-125874800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:125874000-125874800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr4:125874000-125874800	Enhancers	NHDF-Ad	bronchial
17	chr4:125874000-125875000	Enhancers	HUVEC	blood vessel
18	chr4:125874000-125875000	Enhancers	NHEK	skin
19	chr4:125874000-125875200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:125874000-125875400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr4:125874200-125875000	Enhancers	Fetal Heart	heart
22	chr4:125874200-125875000	Enhancers	NHLF	lung
23	chr4:125874400-125874600	Weak transcription	HSMMtube	muscle
24	chr4:125874400-125875000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:125874400-125875000	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links