Variant report

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:125631616..125633726-chr4:125883727..125886839,4	MCF-7	breast:
2	chr4:125633862..125636702-chr4:125883831..125887270,3	MCF-7	breast:
3	chr4:125883788..125886065-chr4:126011029..126013746,2	MCF-7	breast:
4	chr4:125631407..125634222-chr4:125882635..125885809,4	MCF-7	breast:
5	chr4:125884733..125886717-chr4:125893872..125895468,2	MCF-7	breast:
6	chr4:125883634..125885656-chr4:125893409..125896639,3	MCF-7	breast:
7	chr4:125879691..125882061-chr4:125882934..125885892,2	MCF-7	breast:
8	chr4:125875190..125876989-chr4:125883949..125885613,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151458	Chromatin interaction

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10004548	0.95[AFR][1000 genomes]
rs10011547	0.90[EUR][1000 genomes]
rs10011629	0.90[EUR][1000 genomes]
rs10033352	0.90[EUR][1000 genomes]
rs11945367	0.90[EUR][1000 genomes]
rs12331701	0.90[EUR][1000 genomes]
rs12331762	0.90[EUR][1000 genomes]
rs12498985	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12499252	0.90[EUR][1000 genomes]
rs12499593	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500237	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12500339	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12501606	1.00[EUR][1000 genomes]
rs12506963	1.00[EUR][1000 genomes]
rs12508712	0.82[EUR][1000 genomes]
rs12508853	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512668	0.82[EUR][1000 genomes]
rs17008928	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008941	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009001	0.90[EUR][1000 genomes]
rs17009072	0.82[EUR][1000 genomes]
rs17009089	0.90[EUR][1000 genomes]
rs17009136	1.00[EUR][1000 genomes]
rs28407125	0.90[EUR][1000 genomes]
rs28464443	0.90[EUR][1000 genomes]
rs28651708	0.95[AFR][1000 genomes]
rs35278497	0.82[EUR][1000 genomes]
rs57893045	0.82[EUR][1000 genomes]
rs72922698	0.82[EUR][1000 genomes]
rs769310	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv966216	chr4:125883945-125885615	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125882800-125891800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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