Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12498985	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12499252	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12499593	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12500237	1.00[AFR][1000 genomes]
rs12500339	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12501606	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12506963	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12508712	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508853	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17008928	0.91[EUR][1000 genomes]
rs17008930	0.82[EUR][1000 genomes]
rs17008941	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17009001	0.91[EUR][1000 genomes]
rs17009072	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009089	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs17009136	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs35278497	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56289879	1.00[AFR][1000 genomes]
rs57893045	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72922698	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125961600-125964400	Enhancers	NHEK	skin
2	chr4:125962200-125965400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:125963200-125966000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:125964200-125972200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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