Variant report

Variant	rs57893045
Chromosome Location	chr4:125950773-125950774
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10011547	0.91[ASN][1000 genomes]
rs10011629	0.91[ASN][1000 genomes]
rs10033352	0.87[ASN][1000 genomes]
rs11945367	0.91[ASN][1000 genomes]
rs12331701	0.87[ASN][1000 genomes]
rs12331762	0.87[ASN][1000 genomes]
rs12498985	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12499252	0.91[EUR][1000 genomes]
rs12499593	0.91[EUR][1000 genomes]
rs12500339	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12501606	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12506963	0.82[EUR][1000 genomes]
rs12508712	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12508853	0.82[EUR][1000 genomes]
rs12512668	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17008928	0.91[EUR][1000 genomes]
rs17008930	0.82[EUR][1000 genomes]
rs17008941	0.82[EUR][1000 genomes]
rs17009001	0.91[EUR][1000 genomes]
rs17009059	0.92[AFR][1000 genomes]
rs17009072	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17009089	0.91[EUR][1000 genomes]
rs17009136	0.82[EUR][1000 genomes]
rs28407125	0.91[ASN][1000 genomes]
rs28464443	0.87[ASN][1000 genomes]
rs35278497	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72922686	0.99[AFR][1000 genomes]
rs72922698	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125949400-125951400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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