Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12498985	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12499252	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12499593	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12500237	1.00[AFR][1000 genomes]
rs12500339	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12501606	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12506963	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12508712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508853	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12512668	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008928	0.91[EUR][1000 genomes]
rs17008930	0.82[EUR][1000 genomes]
rs17008941	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17009001	0.91[EUR][1000 genomes]
rs17009089	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17009136	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35278497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56289879	1.00[AFR][1000 genomes]
rs57893045	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72922698	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125960800-125963200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:125961600-125964200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:125961600-125964400	Enhancers	NHEK	skin
4	chr4:125961800-125964200	Enhancers	HMEC	breast
5	chr4:125962000-125963800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:125962000-125964000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:125962200-125965400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:125962400-125963200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:125962400-125963400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:125962600-125963600	Enhancers	Fetal Heart	heart

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