Variant report

Variant	rs12500237
Chromosome Location	chr4:125876976-125876977
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12498985	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12499252	1.00[AFR][1000 genomes]
rs12499593	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12500339	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12501606	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12506963	1.00[AFR][1000 genomes]
rs12508712	1.00[AFR][1000 genomes]
rs12508853	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12512668	1.00[AFR][1000 genomes]
rs17008928	1.00[ASN][1000 genomes]
rs17008930	0.94[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17008941	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17009072	1.00[AFR][1000 genomes]
rs17009089	1.00[AFR][1000 genomes]
rs17009136	1.00[AFR][1000 genomes]
rs35278497	1.00[AFR][1000 genomes]
rs56289879	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125875000-125877000	Weak transcription	Left Ventricle	heart
2	chr4:125875000-125879800	Weak transcription	HUVEC	blood vessel
3	chr4:125875400-125879800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:125876800-125877800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links