Variant report

Variant	rs17008928
Chromosome Location	chr4:125881354-125881355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10011547	0.81[EUR][1000 genomes]
rs10011629	0.81[EUR][1000 genomes]
rs10033352	0.81[EUR][1000 genomes]
rs11945367	0.81[EUR][1000 genomes]
rs12331701	0.81[EUR][1000 genomes]
rs12331762	0.81[EUR][1000 genomes]
rs12498985	0.81[EUR][1000 genomes]
rs12499252	0.81[EUR][1000 genomes]
rs12499593	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12500237	1.00[ASN][1000 genomes]
rs12500339	0.90[EUR][1000 genomes]
rs12501606	0.90[EUR][1000 genomes]
rs12506963	0.90[EUR][1000 genomes]
rs12508712	0.91[EUR][1000 genomes]
rs12508853	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12512668	0.91[EUR][1000 genomes]
rs17008930	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17008941	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17009001	0.81[EUR][1000 genomes]
rs17009072	0.91[EUR][1000 genomes]
rs17009089	0.81[EUR][1000 genomes]
rs17009136	0.90[EUR][1000 genomes]
rs28407125	0.81[EUR][1000 genomes]
rs28464443	0.81[EUR][1000 genomes]
rs35278497	0.91[EUR][1000 genomes]
rs57893045	0.91[EUR][1000 genomes]
rs72922698	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125880200-125882200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:125881200-125882600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr4:125881200-125883000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
4	chr4:125881200-125883200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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