Variant report
| Variant | rs17009001 |
|---|---|
| Chromosome Location | chr4:125928501-125928502 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10011547 | 0.81[EUR][1000 genomes] |
| rs10011629 | 0.81[EUR][1000 genomes] |
| rs10033352 | 0.81[EUR][1000 genomes] |
| rs11945367 | 0.81[EUR][1000 genomes] |
| rs12331701 | 0.81[EUR][1000 genomes] |
| rs12331762 | 0.81[EUR][1000 genomes] |
| rs12498985 | 1.00[EUR][1000 genomes] |
| rs12499252 | 1.00[EUR][1000 genomes] |
| rs12499593 | 0.81[EUR][1000 genomes] |
| rs12500339 | 0.90[EUR][1000 genomes] |
| rs12501606 | 0.90[EUR][1000 genomes] |
| rs12506963 | 0.90[EUR][1000 genomes] |
| rs12508712 | 0.91[EUR][1000 genomes] |
| rs12508853 | 0.90[EUR][1000 genomes] |
| rs12512668 | 0.91[EUR][1000 genomes] |
| rs17008928 | 0.81[EUR][1000 genomes] |
| rs17008930 | 0.90[EUR][1000 genomes] |
| rs17008941 | 0.90[EUR][1000 genomes] |
| rs17009072 | 0.91[EUR][1000 genomes] |
| rs17009089 | 1.00[EUR][1000 genomes] |
| rs17009136 | 0.90[EUR][1000 genomes] |
| rs28407125 | 0.81[EUR][1000 genomes] |
| rs28464443 | 0.81[EUR][1000 genomes] |
| rs35278497 | 0.91[EUR][1000 genomes] |
| rs57893045 | 0.91[EUR][1000 genomes] |
| rs72922689 | 0.98[ASN][1000 genomes] |
| rs72922698 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1011752 | chr4:125708756-125932456 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv1001338 | chr4:125708756-126103293 | Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125928400-125932200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
