Variant report

Variant	rs28537893
Chromosome Location	chr4:126046032-126046033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10004548	1.00[AMR][1000 genomes]
rs10012726	1.00[AMR][1000 genomes]
rs10019389	1.00[AMR][1000 genomes]
rs10029125	1.00[AMR][1000 genomes]
rs2663258	1.00[AMR][1000 genomes]
rs2663262	1.00[AMR][1000 genomes]
rs2710537	1.00[AMR][1000 genomes]
rs28470542	1.00[AMR][1000 genomes]
rs28560083	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28642317	1.00[AMR][1000 genomes]
rs28651708	1.00[AMR][1000 genomes]
rs28871071	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs769310	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:126032800-126048400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:126043200-126046400	Weak transcription	Fetal Kidney	kidney
3	chr4:126044600-126046600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:126045000-126046400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:126045200-126046800	Enhancers	NHDF-Ad	bronchial
6	chr4:126045400-126046400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr4:126045400-126046400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:126045600-126047200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:126045800-126046400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:126046000-126046800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr4:126046000-126047000	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:126046000-126047200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:126046000-126047400	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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