Variant report

Variant	rs28470542
Chromosome Location	chr4:126117031-126117032
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10012726	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10019389	1.00[AMR][1000 genomes]
rs10029125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11733424	1.00[AMR][1000 genomes]
rs11942648	1.00[AMR][1000 genomes]
rs12711125	1.00[AMR][1000 genomes]
rs1396700	1.00[AMR][1000 genomes]
rs1509288	1.00[AMR][1000 genomes]
rs2055768	1.00[AMR][1000 genomes]
rs2102461	1.00[AMR][1000 genomes]
rs2457262	1.00[AMR][1000 genomes]
rs2663253	1.00[AMR][1000 genomes]
rs2663258	1.00[AMR][1000 genomes]
rs2663262	1.00[AMR][1000 genomes]
rs2663284	1.00[AMR][1000 genomes]
rs2710537	1.00[AMR][1000 genomes]
rs2710565	1.00[AMR][1000 genomes]
rs2710577	1.00[AMR][1000 genomes]
rs2710581	1.00[AMR][1000 genomes]
rs2710585	1.00[AMR][1000 genomes]
rs2710586	1.00[AMR][1000 genomes]
rs2710588	1.00[AMR][1000 genomes]
rs28537893	1.00[AMR][1000 genomes]
rs28560083	1.00[AMR][1000 genomes]
rs28642317	1.00[AMR][1000 genomes]
rs28871071	1.00[AMR][1000 genomes]
rs4834029	1.00[AMR][1000 genomes]
rs6844307	1.00[AMR][1000 genomes]
rs906793	1.00[AMR][1000 genomes]
rs906794	1.00[AMR][1000 genomes]
rs925244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006068	chr4:126103233-126497467	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:126112600-126119800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:126115400-126119400	Weak transcription	NHDF-Ad	bronchial
3	chr4:126116400-126117600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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