Variant report

Variant	rs2457262
Chromosome Location	chr4:126284991-126284992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10012726	1.00[AMR][1000 genomes]
rs10021774	1.00[MKK][hapmap]
rs10029125	1.00[AMR][1000 genomes]
rs11733424	1.00[AMR][1000 genomes]
rs11942648	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12650153	1.00[MKK][hapmap]
rs12711125	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1396700	1.00[AMR][1000 genomes]
rs1509288	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1509293	1.00[YRI][hapmap]
rs1605825	1.00[YRI][hapmap]
rs1605826	1.00[YRI][hapmap]
rs2055768	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2102461	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2390840	1.00[MKK][hapmap]
rs2663253	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2663258	1.00[AMR][1000 genomes]
rs2663262	1.00[AMR][1000 genomes]
rs2663284	1.00[AMR][1000 genomes]
rs2710537	1.00[AMR][1000 genomes]
rs2710565	1.00[AMR][1000 genomes]
rs2710577	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710581	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710585	1.00[AMR][1000 genomes]
rs2710586	1.00[AMR][1000 genomes]
rs2710588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710589	1.00[YRI][hapmap]
rs28470542	1.00[AMR][1000 genomes]
rs28871071	1.00[AMR][1000 genomes]
rs4834029	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4834043	1.00[LWK][hapmap]
rs6844307	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906793	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906794	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs925244	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs988314	1.00[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006068	chr4:126103233-126497467	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830051	chr4:126234895-126403426	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:126274000-126288800	Weak transcription	Fetal Stomach	stomach
2	chr4:126274000-126289000	Weak transcription	Fetal Brain Male	brain
3	chr4:126274200-126289400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:126276800-126289800	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:126277400-126288800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:126280000-126287000	Weak transcription	Fetal Lung	lung
7	chr4:126280000-126288600	Weak transcription	Fetal Kidney	kidney
8	chr4:126281600-126288800	Weak transcription	NHDF-Ad	bronchial
9	chr4:126282000-126288800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:126282000-126288800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:126282000-126289200	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr4:126282600-126293000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr4:126282800-126288800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:126283400-126288800	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links