Variant report

Variant	rs2710586
Chromosome Location	chr5:86430230-86430231
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10012726	1.00[AMR][1000 genomes]
rs10029125	1.00[AMR][1000 genomes]
rs11733424	1.00[AMR][1000 genomes]
rs11942648	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12711125	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1396700	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1509288	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2055768	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2102461	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2457262	1.00[AMR][1000 genomes]
rs2663253	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2663258	1.00[AMR][1000 genomes]
rs2663262	1.00[AMR][1000 genomes]
rs2663284	1.00[AMR][1000 genomes]
rs2710537	1.00[AMR][1000 genomes]
rs2710565	1.00[AMR][1000 genomes]
rs2710577	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710581	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710588	1.00[AMR][1000 genomes]
rs28470542	1.00[AMR][1000 genomes]
rs28871071	1.00[AMR][1000 genomes]
rs4834029	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6844307	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906793	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs906794	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs925244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931588	chr5:85954428-86904060	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	esv3391024	chr5:86274400-86610445	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	esv3380980	chr5:86334976-86442211	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:86424800-86434000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:86425200-86434200	Weak transcription	NHEK	skin
3	chr5:86426600-86432000	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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