Variant report
| Variant | rs28871071 |
|---|---|
| Chromosome Location | chr4:126123448-126123449 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125631837..125633889-chr4:126121683..126124265,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151458 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10012726 | 1.00[AMR][1000 genomes] |
| rs10019389 | 1.00[AMR][1000 genomes] |
| rs10029125 | 1.00[AMR][1000 genomes] |
| rs11733424 | 1.00[AMR][1000 genomes] |
| rs11942648 | 1.00[AMR][1000 genomes] |
| rs12711125 | 1.00[AMR][1000 genomes] |
| rs1396700 | 1.00[AMR][1000 genomes] |
| rs1509288 | 1.00[AMR][1000 genomes] |
| rs2055768 | 1.00[AMR][1000 genomes] |
| rs2102461 | 1.00[AMR][1000 genomes] |
| rs2457262 | 1.00[AMR][1000 genomes] |
| rs2663253 | 1.00[AMR][1000 genomes] |
| rs2663258 | 1.00[AMR][1000 genomes] |
| rs2663262 | 1.00[AMR][1000 genomes] |
| rs2663284 | 1.00[AMR][1000 genomes] |
| rs2710537 | 1.00[AMR][1000 genomes] |
| rs2710565 | 1.00[AMR][1000 genomes] |
| rs2710577 | 1.00[AMR][1000 genomes] |
| rs2710581 | 1.00[AMR][1000 genomes] |
| rs2710585 | 1.00[AMR][1000 genomes] |
| rs2710586 | 1.00[AMR][1000 genomes] |
| rs2710588 | 1.00[AMR][1000 genomes] |
| rs28470542 | 1.00[AMR][1000 genomes] |
| rs28537893 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28560083 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28642317 | 1.00[AMR][1000 genomes] |
| rs4834029 | 1.00[AMR][1000 genomes] |
| rs6844307 | 1.00[AMR][1000 genomes] |
| rs906793 | 1.00[AMR][1000 genomes] |
| rs906794 | 1.00[AMR][1000 genomes] |
| rs925244 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1006068 | chr4:126103233-126497467 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
