Variant report

Variant	rs2663262
Chromosome Location	chr4:126245562-126245563
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10012726	1.00[AMR][1000 genomes]
rs10029125	1.00[AMR][1000 genomes]
rs11733424	1.00[AMR][1000 genomes]
rs11942648	1.00[AMR][1000 genomes]
rs12711125	1.00[AMR][1000 genomes]
rs1396700	1.00[AMR][1000 genomes]
rs1509288	1.00[AMR][1000 genomes]
rs2055768	1.00[AMR][1000 genomes]
rs2102461	1.00[AMR][1000 genomes]
rs2457262	1.00[AMR][1000 genomes]
rs2663253	1.00[AMR][1000 genomes]
rs2663258	1.00[AMR][1000 genomes]
rs2663284	1.00[AMR][1000 genomes]
rs2710537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2710565	1.00[AMR][1000 genomes]
rs2710577	1.00[AMR][1000 genomes]
rs2710581	1.00[AMR][1000 genomes]
rs2710585	1.00[AMR][1000 genomes]
rs2710586	1.00[AMR][1000 genomes]
rs2710588	1.00[AMR][1000 genomes]
rs28470542	1.00[AMR][1000 genomes]
rs28537893	1.00[AMR][1000 genomes]
rs28560083	1.00[AMR][1000 genomes]
rs28871071	1.00[AMR][1000 genomes]
rs4834029	1.00[AMR][1000 genomes]
rs6844307	1.00[AMR][1000 genomes]
rs906793	1.00[AMR][1000 genomes]
rs906794	1.00[AMR][1000 genomes]
rs925244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006068	chr4:126103233-126497467	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830051	chr4:126234895-126403426	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:126239600-126255200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:126242400-126245600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:126242400-126246200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:126242400-126247000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:126242600-126246000	Flanking Active TSS	HUVEC	blood vessel
6	chr4:126242800-126245600	Active TSS	Fetal Stomach	stomach
7	chr4:126242800-126279600	Weak transcription	Left Ventricle	heart
8	chr4:126243000-126245800	Active TSS	Right Atrium	heart
9	chr4:126243000-126246000	Enhancers	NHEK	skin
10	chr4:126243600-126247200	Active TSS	Fetal Brain Female	brain
11	chr4:126243800-126246200	Weak transcription	Brain Angular Gyrus	brain
12	chr4:126243800-126247400	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr4:126243800-126247800	Weak transcription	Fetal Intestine Large	intestine
14	chr4:126243800-126255200	Weak transcription	Ovary	ovary
15	chr4:126244000-126245600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr4:126244400-126247200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:126244600-126245600	Enhancers	NHLF	lung
18	chr4:126244600-126245800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr4:126244600-126245800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr4:126244600-126247200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr4:126244600-126247400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr4:126244800-126245600	Enhancers	Brain Cingulate Gyrus	brain
23	chr4:126244800-126245600	Flanking Active TSS	Fetal Kidney	kidney
24	chr4:126244800-126245600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr4:126244800-126245600	Flanking Active TSS	NHDF-Ad	bronchial
26	chr4:126244800-126246600	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr4:126244800-126247000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr4:126244800-126247400	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr4:126244800-126247400	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr4:126245000-126245600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr4:126245000-126245600	Flanking Active TSS	Liver	Liver
32	chr4:126245000-126245600	Active TSS	Right Ventricle	heart
33	chr4:126245000-126245800	Flanking Active TSS	Fetal Lung	lung
34	chr4:126245000-126246000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr4:126245200-126245600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:126245200-126245600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
37	chr4:126245200-126245600	Transcr. at gene 5' and 3'	Fetal Brain Male	brain
38	chr4:126245200-126245600	Flanking Active TSS	Rectal Smooth Muscle	rectum
39	chr4:126245200-126246200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr4:126245200-126246400	Enhancers	Fetal Heart	heart
41	chr4:126245400-126245600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:126245400-126245600	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr4:126245400-126245600	Flanking Active TSS	Aorta	Aorta
44	chr4:126245400-126245600	Flanking Active TSS	Brain Substantia Nigra	brain
45	chr4:126245400-126245600	Flanking Active TSS	Colon Smooth Muscle	Colon
46	chr4:126245400-126245600	Active TSS	Duodenum Smooth Muscle	Duodenum
47	chr4:126245400-126245600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr4:126245400-126245600	Enhancers	NH-A	brain
49	chr4:126245400-126245800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
50	chr4:126245400-126245800	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links