Variant report

Variant	rs2710537
Chromosome Location	chr4:126246226-126246227
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10012726	1.00[AMR][1000 genomes]
rs10029125	1.00[AMR][1000 genomes]
rs11733424	1.00[AMR][1000 genomes]
rs11942648	1.00[AMR][1000 genomes]
rs12711125	1.00[AMR][1000 genomes]
rs1396700	1.00[AMR][1000 genomes]
rs1509288	1.00[AMR][1000 genomes]
rs2055768	1.00[AMR][1000 genomes]
rs2102461	1.00[AMR][1000 genomes]
rs2457262	1.00[AMR][1000 genomes]
rs2663253	1.00[AMR][1000 genomes]
rs2663258	1.00[AMR][1000 genomes]
rs2663262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2663284	1.00[AMR][1000 genomes]
rs2710565	1.00[AMR][1000 genomes]
rs2710577	1.00[AMR][1000 genomes]
rs2710581	1.00[AMR][1000 genomes]
rs2710585	1.00[AMR][1000 genomes]
rs2710586	1.00[AMR][1000 genomes]
rs2710588	1.00[AMR][1000 genomes]
rs28470542	1.00[AMR][1000 genomes]
rs28537893	1.00[AMR][1000 genomes]
rs28560083	1.00[AMR][1000 genomes]
rs28871071	1.00[AMR][1000 genomes]
rs4834029	1.00[AMR][1000 genomes]
rs6844307	1.00[AMR][1000 genomes]
rs906793	1.00[AMR][1000 genomes]
rs906794	1.00[AMR][1000 genomes]
rs925244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006068	chr4:126103233-126497467	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830051	chr4:126234895-126403426	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:126239600-126255200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:126242400-126247000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:126242800-126279600	Weak transcription	Left Ventricle	heart
4	chr4:126243600-126247200	Active TSS	Fetal Brain Female	brain
5	chr4:126243800-126247400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:126243800-126247800	Weak transcription	Fetal Intestine Large	intestine
7	chr4:126243800-126255200	Weak transcription	Ovary	ovary
8	chr4:126244400-126247200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:126244600-126247200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr4:126244600-126247400	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr4:126244800-126246600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr4:126244800-126247000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr4:126244800-126247400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:126244800-126247400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr4:126245200-126246400	Enhancers	Fetal Heart	heart
16	chr4:126245400-126246400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:126245400-126255400	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:126245400-126255400	Weak transcription	Psoas Muscle	Psoas
19	chr4:126245600-126246400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr4:126245600-126246400	Enhancers	Adipose Nuclei	Adipose
21	chr4:126245600-126246400	Enhancers	Fetal Kidney	kidney
22	chr4:126245600-126246600	Enhancers	Rectal Smooth Muscle	rectum
23	chr4:126245600-126246600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr4:126245600-126247000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:126245600-126247000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr4:126245600-126247000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:126245600-126252000	Weak transcription	Fetal Stomach	stomach
28	chr4:126245600-126253400	Weak transcription	NHLF	lung
29	chr4:126245600-126254600	Weak transcription	NHDF-Ad	bronchial
30	chr4:126245800-126246600	Weak transcription	Fetal Brain Male	brain
31	chr4:126245800-126247000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr4:126245800-126247000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:126245800-126247000	Enhancers	Fetal Lung	lung
34	chr4:126245800-126247200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:126245800-126250800	Weak transcription	HSMM	muscle
36	chr4:126245800-126252000	Weak transcription	Right Atrium	heart
37	chr4:126245800-126256000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr4:126245800-126266000	Weak transcription	Brain Substantia Nigra	brain
39	chr4:126246000-126246400	Weak transcription	Colon Smooth Muscle	Colon
40	chr4:126246000-126247200	Enhancers	HUVEC	blood vessel
41	chr4:126246000-126259000	Weak transcription	Aorta	Aorta
42	chr4:126246200-126246400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr4:126246200-126246400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr4:126246200-126246400	Enhancers	Brain Angular Gyrus	brain
45	chr4:126246200-126247000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:126246200-126247200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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