Variant report
| Variant | rs28655315 |
|---|---|
| Chromosome Location | chr8:117916591-117916592 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:117912430..117915010-chr8:117915737..117918233,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10093705 | 1.00[AMR][1000 genomes] |
| rs10109228 | 1.00[AMR][1000 genomes] |
| rs10113111 | 1.00[AMR][1000 genomes] |
| rs16888877 | 1.00[AMR][1000 genomes] |
| rs16888890 | 1.00[AMR][1000 genomes] |
| rs16888941 | 1.00[AMR][1000 genomes] |
| rs17426110 | 1.00[AMR][1000 genomes] |
| rs28435805 | 1.00[AMR][1000 genomes] |
| rs28642285 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28683767 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56235487 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57809926 | 1.00[AMR][1000 genomes] |
| rs60764187 | 1.00[AMR][1000 genomes] |
| rs7008659 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7014462 | 1.00[AMR][1000 genomes] |
| rs73703431 | 1.00[AMR][1000 genomes] |
| rs73703432 | 1.00[AMR][1000 genomes] |
| rs7817659 | 1.00[AMR][1000 genomes] |
| rs7821544 | 1.00[AMR][1000 genomes] |
| rs9656914 | 1.00[AMR][1000 genomes] |
| rs9656915 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530386 | chr8:117509968-118391406 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| 2 | nsv831434 | chr8:117784467-117977825 | Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:117915600-117916600 | Enhancers | Brain Substantia Nigra | brain |
