Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10093705	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109228	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs10113111	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs16888877	0.80[YRI][hapmap];1.00[AMR][1000 genomes]
rs16888890	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16888941	1.00[AMR][1000 genomes]
rs16889060	1.00[YRI][hapmap]
rs17426110	1.00[AMR][1000 genomes]
rs28435805	1.00[AMR][1000 genomes]
rs28642285	1.00[AMR][1000 genomes]
rs28655315	1.00[AMR][1000 genomes]
rs28683767	1.00[AMR][1000 genomes]
rs2921773	0.91[AFR][1000 genomes]
rs56235487	1.00[AMR][1000 genomes]
rs57809926	1.00[AMR][1000 genomes]
rs60764187	1.00[AMR][1000 genomes]
rs7008659	1.00[AMR][1000 genomes]
rs7014462	1.00[AMR][1000 genomes]
rs73703431	1.00[AMR][1000 genomes]
rs73703432	1.00[AMR][1000 genomes]
rs7817659	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs7821544	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9656915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117899600-117902000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:117899600-117902000	Enhancers	Hela-S3	cervix
3	chr8:117900000-117901200	Weak transcription	HepG2	liver
4	chr8:117900000-117901800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr8:117900000-117902800	Weak transcription	HMEC	breast
6	chr8:117900200-117901600	Weak transcription	Osteobl	bone
7	chr8:117900200-117901800	Weak transcription	NHLF	lung
8	chr8:117900200-117902000	Enhancers	Dnd41	blood
9	chr8:117900400-117901600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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