Variant report

Variant	rs28683767
Chromosome Location	chr8:117915765-117915766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10093705	1.00[AMR][1000 genomes]
rs10109228	1.00[AMR][1000 genomes]
rs10113111	1.00[AMR][1000 genomes]
rs16888877	1.00[AMR][1000 genomes]
rs16888890	1.00[AMR][1000 genomes]
rs16888941	1.00[AMR][1000 genomes]
rs17426110	1.00[AMR][1000 genomes]
rs28435805	1.00[AMR][1000 genomes]
rs28642285	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28655315	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56235487	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57809926	1.00[AMR][1000 genomes]
rs60764187	1.00[AMR][1000 genomes]
rs7008659	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7014462	1.00[AMR][1000 genomes]
rs73703431	1.00[AMR][1000 genomes]
rs73703432	1.00[AMR][1000 genomes]
rs7817659	1.00[AMR][1000 genomes]
rs7821544	1.00[AMR][1000 genomes]
rs9656914	1.00[AMR][1000 genomes]
rs9656915	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117913200-117915800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:117913200-117915800	Enhancers	HMEC	breast
3	chr8:117914000-117915800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:117915400-117916400	Enhancers	HSMMtube	muscle
5	chr8:117915600-117916200	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr8:117915600-117916200	Enhancers	Dnd41	blood
7	chr8:117915600-117916600	Enhancers	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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