Variant report

Variant	rs28659806
Chromosome Location	chr4:99888146-99888147
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:99885525..99888243-chr4:99896399..99898619,2	K562	blood:
2	chr4:99848912..99850641-chr4:99886887..99889818,2	K562	blood:
3	chr4:99849385..99851399-chr4:99887411..99889199,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151247	Chromatin interaction
ENSG00000251437	Chromatin interaction
ENSG00000238449	Chromatin interaction
ENSG00000263923	Chromatin interaction

Extended variants
information (count: 73 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10002449	0.96[EUR][1000 genomes]
rs10084896	0.96[EUR][1000 genomes]
rs17028370	0.96[EUR][1000 genomes]
rs55831712	0.96[EUR][1000 genomes]
rs62323213	0.96[EUR][1000 genomes]
rs62323214	0.96[EUR][1000 genomes]
rs62323216	0.96[EUR][1000 genomes]
rs62323217	0.96[EUR][1000 genomes]
rs62323230	0.96[EUR][1000 genomes]
rs62323231	0.96[EUR][1000 genomes]
rs62323233	0.96[EUR][1000 genomes]
rs62323234	0.96[EUR][1000 genomes]
rs62323235	0.96[EUR][1000 genomes]
rs62323236	0.96[EUR][1000 genomes]
rs62323237	0.96[EUR][1000 genomes]
rs62323238	0.96[EUR][1000 genomes]
rs62323240	0.96[EUR][1000 genomes]
rs62323241	0.96[EUR][1000 genomes]
rs62323242	0.96[EUR][1000 genomes]
rs62323244	0.96[EUR][1000 genomes]
rs62323245	0.88[EUR][1000 genomes]
rs62323246	0.96[EUR][1000 genomes]
rs62323247	0.96[EUR][1000 genomes]
rs62323248	0.96[EUR][1000 genomes]
rs62323249	0.96[EUR][1000 genomes]
rs62323250	0.96[EUR][1000 genomes]
rs62323251	0.96[EUR][1000 genomes]
rs62323252	0.96[EUR][1000 genomes]
rs62323253	0.96[EUR][1000 genomes]
rs62323254	0.96[EUR][1000 genomes]
rs62323255	0.96[EUR][1000 genomes]
rs62323256	0.96[EUR][1000 genomes]
rs62323257	0.96[EUR][1000 genomes]
rs62323258	0.96[EUR][1000 genomes]
rs62323259	0.96[EUR][1000 genomes]
rs62325160	0.96[EUR][1000 genomes]
rs62325161	0.96[EUR][1000 genomes]
rs62325182	0.96[EUR][1000 genomes]
rs62325183	0.96[EUR][1000 genomes]
rs62325184	0.96[EUR][1000 genomes]
rs62325185	0.96[EUR][1000 genomes]
rs62325186	0.96[EUR][1000 genomes]
rs62325187	0.96[EUR][1000 genomes]
rs62325188	0.96[EUR][1000 genomes]
rs62325189	0.96[EUR][1000 genomes]
rs62325190	0.85[EUR][1000 genomes]
rs62325192	0.96[EUR][1000 genomes]
rs62325193	0.96[EUR][1000 genomes]
rs62325194	0.96[EUR][1000 genomes]
rs62325195	0.96[EUR][1000 genomes]
rs62325196	0.96[EUR][1000 genomes]
rs62325197	0.96[EUR][1000 genomes]
rs62325198	0.96[EUR][1000 genomes]
rs62325199	0.96[EUR][1000 genomes]
rs62325200	0.96[EUR][1000 genomes]
rs62325201	0.96[EUR][1000 genomes]
rs62325202	0.96[EUR][1000 genomes]
rs62325203	0.96[EUR][1000 genomes]
rs62325204	0.96[EUR][1000 genomes]
rs62325205	0.96[EUR][1000 genomes]
rs62325206	0.96[EUR][1000 genomes]
rs62325208	0.96[EUR][1000 genomes]
rs62325209	0.96[EUR][1000 genomes]
rs62325210	0.96[EUR][1000 genomes]
rs62325211	0.96[EUR][1000 genomes]
rs62325212	0.96[EUR][1000 genomes]
rs62325213	0.96[EUR][1000 genomes]
rs62325236	0.96[EUR][1000 genomes]
rs62325237	0.96[EUR][1000 genomes]
rs62325238	0.96[EUR][1000 genomes]
rs6825110	0.83[AFR][1000 genomes]
rs9995869	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28659806	ADH5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99885800-99891600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:99886400-99891000	Weak transcription	Osteobl	bone
3	chr4:99886400-99891200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:99886400-99891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:99886400-99891200	Weak transcription	NHEK	skin
6	chr4:99886400-99891400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:99886600-99891200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:99887400-99888400	Weak transcription	Fetal Intestine Large	intestine
9	chr4:99887400-99888800	Enhancers	Fetal Intestine Small	intestine
10	chr4:99887400-99893600	Weak transcription	HMEC	breast
11	chr4:99887600-99891200	Weak transcription	K562	blood

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