Variant report

Variant	rs9995869
Chromosome Location	chr4:99897984-99897985
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99885525..99888243-chr4:99896399..99898619,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EIF4E-2	chr4:99897951-99898268	NONHSAT097510

Variant related genes	Relation type
ENSG00000252548	Chromatin interaction

Extended variants
information (count: 108 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10002449	1.00[EUR][1000 genomes]
rs10084896	1.00[EUR][1000 genomes]
rs17028370	1.00[EUR][1000 genomes]
rs28659806	0.96[EUR][1000 genomes]
rs28730581	0.81[EUR][1000 genomes]
rs28730584	0.81[EUR][1000 genomes]
rs28730596	0.81[EUR][1000 genomes]
rs28730611	0.81[EUR][1000 genomes]
rs28730617	0.81[EUR][1000 genomes]
rs28730625	0.81[EUR][1000 genomes]
rs28730641	0.81[EUR][1000 genomes]
rs28730643	0.81[EUR][1000 genomes]
rs28730644	0.81[EUR][1000 genomes]
rs28730645	0.81[EUR][1000 genomes]
rs28730646	0.81[EUR][1000 genomes]
rs28730649	0.81[EUR][1000 genomes]
rs28894370	0.81[EUR][1000 genomes]
rs29001338	0.81[EUR][1000 genomes]
rs29001342	0.81[EUR][1000 genomes]
rs29001346	0.81[EUR][1000 genomes]
rs29001348	0.81[EUR][1000 genomes]
rs5003497	0.81[EUR][1000 genomes]
rs55831712	1.00[EUR][1000 genomes]
rs61431883	0.81[EUR][1000 genomes]
rs62323213	1.00[EUR][1000 genomes]
rs62323214	1.00[EUR][1000 genomes]
rs62323216	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323217	1.00[EUR][1000 genomes]
rs62323230	1.00[EUR][1000 genomes]
rs62323231	1.00[EUR][1000 genomes]
rs62323233	1.00[EUR][1000 genomes]
rs62323234	1.00[EUR][1000 genomes]
rs62323235	1.00[EUR][1000 genomes]
rs62323236	1.00[EUR][1000 genomes]
rs62323237	1.00[EUR][1000 genomes]
rs62323238	1.00[EUR][1000 genomes]
rs62323240	1.00[EUR][1000 genomes]
rs62323241	1.00[EUR][1000 genomes]
rs62323242	1.00[EUR][1000 genomes]
rs62323244	1.00[EUR][1000 genomes]
rs62323245	0.92[EUR][1000 genomes]
rs62323246	1.00[EUR][1000 genomes]
rs62323247	1.00[EUR][1000 genomes]
rs62323248	1.00[EUR][1000 genomes]
rs62323249	1.00[EUR][1000 genomes]
rs62323250	1.00[EUR][1000 genomes]
rs62323251	1.00[EUR][1000 genomes]
rs62323252	1.00[EUR][1000 genomes]
rs62323253	1.00[EUR][1000 genomes]
rs62323254	1.00[EUR][1000 genomes]
rs62323255	1.00[EUR][1000 genomes]
rs62323256	1.00[EUR][1000 genomes]
rs62323257	1.00[EUR][1000 genomes]
rs62323258	1.00[EUR][1000 genomes]
rs62323259	1.00[EUR][1000 genomes]
rs62325160	1.00[EUR][1000 genomes]
rs62325161	1.00[EUR][1000 genomes]
rs62325182	1.00[EUR][1000 genomes]
rs62325183	1.00[EUR][1000 genomes]
rs62325184	1.00[EUR][1000 genomes]
rs62325185	1.00[EUR][1000 genomes]
rs62325186	1.00[EUR][1000 genomes]
rs62325187	1.00[EUR][1000 genomes]
rs62325188	1.00[EUR][1000 genomes]
rs62325189	1.00[EUR][1000 genomes]
rs62325190	0.89[EUR][1000 genomes]
rs62325192	1.00[EUR][1000 genomes]
rs62325193	1.00[EUR][1000 genomes]
rs62325194	1.00[EUR][1000 genomes]
rs62325195	1.00[EUR][1000 genomes]
rs62325196	1.00[EUR][1000 genomes]
rs62325197	1.00[EUR][1000 genomes]
rs62325198	1.00[EUR][1000 genomes]
rs62325199	1.00[EUR][1000 genomes]
rs62325200	1.00[EUR][1000 genomes]
rs62325201	1.00[EUR][1000 genomes]
rs62325202	1.00[EUR][1000 genomes]
rs62325203	1.00[EUR][1000 genomes]
rs62325204	1.00[EUR][1000 genomes]
rs62325205	1.00[EUR][1000 genomes]
rs62325206	1.00[EUR][1000 genomes]
rs62325208	1.00[EUR][1000 genomes]
rs62325209	1.00[EUR][1000 genomes]
rs62325210	1.00[EUR][1000 genomes]
rs62325211	1.00[EUR][1000 genomes]
rs62325212	1.00[EUR][1000 genomes]
rs62325213	1.00[EUR][1000 genomes]
rs62325236	1.00[EUR][1000 genomes]
rs62325237	1.00[EUR][1000 genomes]
rs62325238	1.00[EUR][1000 genomes]
rs62325239	0.81[EUR][1000 genomes]
rs62325240	0.81[EUR][1000 genomes]
rs62325241	0.81[EUR][1000 genomes]
rs62325242	0.81[EUR][1000 genomes]
rs62325245	0.81[EUR][1000 genomes]
rs6532781	0.81[EUR][1000 genomes]
rs6532792	0.81[EUR][1000 genomes]
rs6819694	0.81[EUR][1000 genomes]
rs6819724	0.81[EUR][1000 genomes]
rs6822742	0.81[EUR][1000 genomes]
rs6823388	0.81[EUR][1000 genomes]
rs6827292	0.81[EUR][1000 genomes]
rs72897156	0.81[EUR][1000 genomes]
rs7667261	0.81[EUR][1000 genomes]
rs7679102	0.81[EUR][1000 genomes]
rs7681427	0.81[EUR][1000 genomes]
rs7687322	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9995869	ADH5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99897600-99898400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:99897600-99898600	Enhancers	Aorta	Aorta
3	chr4:99897800-99898200	Enhancers	HUVEC	blood vessel
4	chr4:99897800-99898400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:99897800-99898400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:99897800-99898400	Enhancers	HMEC	breast
7	chr4:99897800-99898600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:99897800-99898600	Enhancers	Placenta	Placenta
9	chr4:99897800-99898600	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links