Variant report

Variant	rs62323234
Chromosome Location	chr4:99914868-99914869
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:99859227..99861743-chr4:99914804..99916437,2	K562	blood:
2	chr4:99914813..99916738-chr4:99980811..99982387,2	MCF-7	breast:
3	chr4:99913236..99916407-chr4:99949384..99951097,3	K562	blood:
4	chr4:99846410..99852563-chr4:99914756..99918771,11	MCF-7	breast:
5	chr4:99842136..99852937-chr4:99913200..99922220,39	K562	blood:
6	chr4:99844460..99852883-chr4:99909835..99921707,41	K562	blood:

Variant related genes	Relation type
ENSG00000263923	Chromatin interaction
ENSG00000151247	Chromatin interaction
ENSG00000238449	Chromatin interaction

Extended variants
information (count: 113 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10002449	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10084896	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17028370	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28659806	0.96[EUR][1000 genomes]
rs28720156	1.00[AMR][1000 genomes]
rs28730581	0.81[EUR][1000 genomes]
rs28730584	0.81[EUR][1000 genomes]
rs28730596	0.81[EUR][1000 genomes]
rs28730601	0.83[AMR][1000 genomes]
rs28730611	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28730617	0.81[EUR][1000 genomes]
rs28730625	0.81[EUR][1000 genomes]
rs28730641	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28730643	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28730644	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28730645	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28730646	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28730649	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28894370	0.81[EUR][1000 genomes]
rs28894371	1.00[AMR][1000 genomes]
rs29001228	1.00[AMR][1000 genomes]
rs29001338	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs29001342	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs29001346	0.81[EUR][1000 genomes]
rs29001348	0.81[EUR][1000 genomes]
rs5003497	0.81[EUR][1000 genomes]
rs55831712	1.00[EUR][1000 genomes]
rs61431883	0.81[EUR][1000 genomes]
rs62323213	1.00[EUR][1000 genomes]
rs62323214	1.00[EUR][1000 genomes]
rs62323216	1.00[EUR][1000 genomes]
rs62323217	1.00[EUR][1000 genomes]
rs62323230	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323231	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323233	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323236	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323237	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323238	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323244	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323245	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62323246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323248	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323249	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323251	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323252	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323253	1.00[EUR][1000 genomes]
rs62323254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323255	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323256	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62323259	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325160	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325161	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325182	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325183	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325184	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325185	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325186	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325187	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325188	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325189	1.00[EUR][1000 genomes]
rs62325190	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62325192	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325193	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325194	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325195	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325196	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325197	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325198	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325199	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325200	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325202	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325203	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325205	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325206	1.00[EUR][1000 genomes]
rs62325208	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325209	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325210	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325211	1.00[EUR][1000 genomes]
rs62325212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325236	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325237	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325238	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62325239	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62325240	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62325241	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62325242	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62325245	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6532781	0.81[EUR][1000 genomes]
rs6532792	0.81[EUR][1000 genomes]
rs6819694	0.81[EUR][1000 genomes]
rs6819724	0.81[EUR][1000 genomes]
rs6822742	0.81[EUR][1000 genomes]
rs6823388	0.81[EUR][1000 genomes]
rs6827292	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72897156	0.81[EUR][1000 genomes]
rs7667261	0.81[EUR][1000 genomes]
rs7679102	0.81[EUR][1000 genomes]
rs7681427	0.81[EUR][1000 genomes]
rs7687322	0.81[EUR][1000 genomes]
rs7699232	0.83[AMR][1000 genomes]
rs9995869	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99912600-99915400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr4:99914200-99916200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:99914600-99915200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:99914800-99915000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:99914800-99915000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links