Variant report

Variant	rs28659849
Chromosome Location	chr8:90228711-90228712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10092015	1.00[AMR][1000 genomes]
rs10093765	1.00[AMR][1000 genomes]
rs10098961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10109707	1.00[AMR][1000 genomes]
rs28412952	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28660043	1.00[AMR][1000 genomes]
rs28668128	1.00[AMR][1000 genomes]
rs7011541	1.00[AMR][1000 genomes]
rs9297645	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1034759	chr8:90152834-90252502	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv821658	chr8:90199535-90245081	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90228000-90229400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:90228000-90229400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:90228200-90229000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr8:90228200-90229000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:90228400-90228800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr8:90228400-90228800	Flanking Active TSS	Dnd41	blood
7	chr8:90228400-90229000	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr8:90228400-90229000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr8:90228400-90229000	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr8:90228400-90229400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr8:90228600-90229400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr8:90228600-90229400	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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