Variant report

Variant	rs7011541
Chromosome Location	chr8:90321522-90321523
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10092015	1.00[AMR][1000 genomes]
rs10093765	1.00[AMR][1000 genomes]
rs10098961	1.00[AMR][1000 genomes]
rs10109707	1.00[AMR][1000 genomes]
rs28412952	1.00[AMR][1000 genomes]
rs28659849	1.00[AMR][1000 genomes]
rs28660043	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28668128	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9297645	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032886	chr8:90253748-90398240	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	nsv891178	chr8:90289326-90337010	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv891179	chr8:90307652-90335826	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90319200-90321600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr8:90319200-90321600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:90319400-90321600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:90320400-90321600	Enhancers	Primary hematopoietic stem cells	blood
5	chr8:90320600-90321600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:90320800-90324800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr8:90321200-90325000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:90321400-90323400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr8:90321400-90324800	Weak transcription	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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