Variant report

Variant	rs2866027
Chromosome Location	chr4:99702014-99702015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1406034	1.00[AMR][1000 genomes]
rs2178126	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866025	0.93[AMR][1000 genomes]
rs34108484	0.93[AMR][1000 genomes]
rs34139935	0.93[AMR][1000 genomes]
rs34417635	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35197075	1.00[AMR][1000 genomes]
rs35248449	0.93[AMR][1000 genomes]
rs62325490	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99694000-99710600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:99699000-99702200	Enhancers	Fetal Intestine Large	intestine
3	chr4:99699000-99703600	Enhancers	Fetal Muscle Leg	muscle
4	chr4:99700000-99703000	Enhancers	Placenta	Placenta
5	chr4:99700600-99706000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:99700800-99706200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:99701000-99703200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:99701200-99702800	Weak transcription	Esophagus	oesophagus
9	chr4:99701200-99705400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr4:99701600-99702800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr4:99702000-99702200	Enhancers	K562	blood
12	chr4:99702000-99705400	Weak transcription	Fetal Intestine Small	intestine
13	chr4:99702000-99716200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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