Variant report

Variant	rs35248449
Chromosome Location	chr4:99694550-99694551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1406034	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1808953	1.00[ASN][1000 genomes]
rs2120376	1.00[ASN][1000 genomes]
rs2178126	0.93[AMR][1000 genomes]
rs2866025	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866027	0.93[AMR][1000 genomes]
rs34108484	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34139935	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34417635	0.93[AMR][1000 genomes]
rs35019282	1.00[ASN][1000 genomes]
rs35070786	1.00[ASN][1000 genomes]
rs35197075	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35966034	1.00[ASN][1000 genomes]
rs62325490	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6822967	1.00[ASN][1000 genomes]
rs920806	1.00[ASN][1000 genomes]
rs968054	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99694000-99698800	Weak transcription	HepG2	liver
2	chr4:99694000-99699000	Weak transcription	Fetal Intestine Large	intestine
3	chr4:99694000-99699000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:99694000-99699000	Weak transcription	Stomach Mucosa	stomach
5	chr4:99694000-99710600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr4:99694200-99699000	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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