Variant report

Variant	rs34139935
Chromosome Location	chr4:99699536-99699537
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1406034	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1808953	1.00[ASN][1000 genomes]
rs2120376	1.00[ASN][1000 genomes]
rs2178126	0.93[AMR][1000 genomes]
rs2866025	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2866027	0.93[AMR][1000 genomes]
rs34108484	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34417635	0.93[AMR][1000 genomes]
rs35019282	1.00[ASN][1000 genomes]
rs35070786	1.00[ASN][1000 genomes]
rs35197075	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35248449	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35966034	1.00[ASN][1000 genomes]
rs62325490	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6822967	1.00[ASN][1000 genomes]
rs920806	1.00[ASN][1000 genomes]
rs968054	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99694000-99710600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:99698800-99701600	Enhancers	HepG2	liver
3	chr4:99699000-99699600	Enhancers	HUVEC	blood vessel
4	chr4:99699000-99700400	Enhancers	Small Intestine	intestine
5	chr4:99699000-99700400	Enhancers	Stomach Mucosa	stomach
6	chr4:99699000-99700600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:99699000-99700600	Enhancers	Duodenum Mucosa	Duodenum
8	chr4:99699000-99701200	Enhancers	Muscle Satellite Cultured Cells	--
9	chr4:99699000-99701200	Enhancers	Esophagus	oesophagus
10	chr4:99699000-99701200	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr4:99699000-99702000	Enhancers	Fetal Intestine Small	intestine
12	chr4:99699000-99702200	Enhancers	Fetal Intestine Large	intestine
13	chr4:99699000-99703600	Enhancers	Fetal Muscle Leg	muscle
14	chr4:99699200-99699600	Enhancers	NHEK	skin
15	chr4:99699200-99700000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:99699200-99700800	Enhancers	Rectal Mucosa Donor 29	rectum
17	chr4:99699400-99699800	Active TSS	A549	lung
18	chr4:99699400-99700400	Weak transcription	K562	blood
19	chr4:99699400-99702000	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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