Variant report

Variant	rs28662125
Chromosome Location	chr15:59471697-59471698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4774324	1.00[EUR][1000 genomes]
rs4775140	1.00[EUR][1000 genomes]
rs55851003	1.00[EUR][1000 genomes]
rs56192171	1.00[EUR][1000 genomes]
rs74020307	1.00[EUR][1000 genomes]
rs74020308	1.00[EUR][1000 genomes]
rs74020310	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833025	chr15:59336148-59522176	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1035868	chr15:59402426-59530594	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59436000-59473000	Weak transcription	Brain Germinal Matrix	brain
2	chr15:59437800-59484400	Weak transcription	Fetal Brain Male	brain
3	chr15:59445600-59479600	Weak transcription	Fetal Kidney	kidney
4	chr15:59451200-59473600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr15:59451600-59474600	Weak transcription	Psoas Muscle	Psoas
6	chr15:59454000-59482000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:59458600-59473800	Strong transcription	Primary B cells from peripheral blood	blood
8	chr15:59461000-59474800	Strong transcription	Liver	Liver
9	chr15:59463200-59473000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:59463600-59471800	Weak transcription	Small Intestine	intestine
11	chr15:59464000-59472800	Weak transcription	Ovary	ovary
12	chr15:59464200-59474000	Weak transcription	HepG2	liver
13	chr15:59464400-59496800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr15:59466800-59473200	Weak transcription	Primary B cells from cord blood	blood
15	chr15:59466800-59474200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr15:59467200-59474000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr15:59467600-59473600	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:59467800-59473400	Strong transcription	Fetal Intestine Small	intestine
19	chr15:59467800-59473600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr15:59467800-59473800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:59467800-59479600	Weak transcription	Brain Angular Gyrus	brain
22	chr15:59467800-59523200	Weak transcription	Fetal Brain Female	brain
23	chr15:59468000-59474000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:59468000-59479800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr15:59468000-59480000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr15:59468200-59528600	Weak transcription	Stomach Mucosa	stomach
27	chr15:59468600-59472200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:59468600-59472800	Strong transcription	Osteobl	bone
29	chr15:59468600-59521400	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr15:59468800-59471800	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:59468800-59472400	Strong transcription	HUVEC	blood vessel
32	chr15:59468800-59473000	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr15:59468800-59473400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr15:59468800-59490800	Strong transcription	Duodenum Mucosa	Duodenum
35	chr15:59468800-59492600	Strong transcription	Fetal Intestine Large	intestine
36	chr15:59469000-59471800	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:59469000-59471800	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr15:59469000-59471800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr15:59469000-59471800	Strong transcription	NH-A	brain
40	chr15:59469000-59472000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr15:59469000-59472000	Strong transcription	Stomach Smooth Muscle	stomach
42	chr15:59469000-59472800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:59469000-59473200	Strong transcription	Aorta	Aorta
44	chr15:59469000-59473400	Enhancers	HSMMtube	muscle
45	chr15:59469000-59482800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:59469200-59472000	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr15:59469200-59472000	Genic enhancers	Placenta	Placenta
48	chr15:59469400-59471800	Strong transcription	Brain Hippocampus Middle	brain
49	chr15:59469400-59471800	Strong transcription	Rectal Smooth Muscle	rectum
50	chr15:59469400-59473800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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