Variant report

Variant	rs4775140
Chromosome Location	chr15:59548821-59548822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16941346	1.00[TSI][hapmap]
rs28662125	1.00[EUR][1000 genomes]
rs4774324	1.00[EUR][1000 genomes]
rs55851003	1.00[EUR][1000 genomes]
rs56192171	1.00[EUR][1000 genomes]
rs7165587	1.00[MEX][hapmap]
rs74020307	1.00[EUR][1000 genomes]
rs74020308	1.00[EUR][1000 genomes]
rs74020310	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv833027	chr15:59474806-59608544	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv904272	chr15:59500577-59549018	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv904273	chr15:59518488-59567137	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59511400-59549200	Weak transcription	Colonic Mucosa	Colon
2	chr15:59515800-59566600	Weak transcription	Pancreas	Pancrea
3	chr15:59517800-59564200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:59521600-59566400	Weak transcription	Psoas Muscle	Psoas
5	chr15:59524600-59569200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:59524600-59574600	Weak transcription	Lung	lung
7	chr15:59525200-59554000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:59525200-59566600	Weak transcription	Small Intestine	intestine
9	chr15:59525200-59582000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr15:59530600-59558200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr15:59530600-59568000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr15:59530800-59549400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr15:59530800-59569000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr15:59533400-59559800	Weak transcription	NHLF	lung
15	chr15:59533400-59564000	Weak transcription	Ovary	ovary
16	chr15:59533400-59566800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:59536600-59559000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:59540000-59551200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:59540000-59560000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:59540000-59568800	Weak transcription	Fetal Kidney	kidney
21	chr15:59540200-59549400	Weak transcription	HUVEC	blood vessel
22	chr15:59540400-59552600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr15:59540600-59561400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:59541000-59554000	Weak transcription	Right Ventricle	heart
25	chr15:59541000-59558000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:59541200-59549400	Weak transcription	Adipose Nuclei	Adipose
27	chr15:59541200-59566400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr15:59542200-59550600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr15:59542400-59551600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr15:59542400-59568200	Weak transcription	Gastric	stomach
31	chr15:59542600-59549400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr15:59542600-59559800	Weak transcription	Spleen	Spleen
33	chr15:59542600-59563000	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr15:59542800-59565400	Weak transcription	Left Ventricle	heart
35	chr15:59543200-59552400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr15:59543200-59553600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:59543200-59568200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:59543600-59551400	Weak transcription	NHDF-Ad	bronchial
39	chr15:59543800-59550600	Weak transcription	Brain Substantia Nigra	brain
40	chr15:59544000-59566200	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr15:59544600-59582400	Weak transcription	Primary B cells from cord blood	blood
42	chr15:59544800-59552800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:59545000-59560000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:59545200-59557000	Weak transcription	Primary B cells from peripheral blood	blood
45	chr15:59546400-59552800	Strong transcription	Osteobl	bone
46	chr15:59546600-59550000	Genic enhancers	Fetal Intestine Small	intestine
47	chr15:59546600-59551000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:59546600-59551400	Enhancers	Liver	Liver
49	chr15:59546600-59551600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr15:59546800-59551600	Strong transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links