Variant report

Variant	rs2866904
Chromosome Location	chr4:107344198-107344199
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11938517	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12506993	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17036734	0.93[CHB][hapmap];0.94[CHD][hapmap];0.89[JPT][hapmap]
rs2866905	0.94[EUR][1000 genomes]
rs2949632	0.82[TSI][hapmap]
rs3018056	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3018076	0.82[TSI][hapmap]
rs3108137	0.91[EUR][1000 genomes]
rs3108139	0.93[EUR][1000 genomes]
rs3108140	0.93[EUR][1000 genomes]
rs3108141	0.92[EUR][1000 genomes]
rs3108143	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3108148	0.90[EUR][1000 genomes]
rs3113244	0.92[EUR][1000 genomes]
rs4383690	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6850696	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107342200-107344200	Enhancers	Osteobl	bone
2	chr4:107342200-107344400	Enhancers	HSMMtube	muscle
3	chr4:107342200-107344400	Enhancers	NHDF-Ad	bronchial
4	chr4:107343000-107344400	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:107343000-107344600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:107343200-107344200	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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