Variant report

Variant	rs3108137
Chromosome Location	chr4:107332328-107332329
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12506993	0.87[EUR][1000 genomes]
rs2866904	0.91[EUR][1000 genomes]
rs2866905	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3018056	0.91[EUR][1000 genomes]
rs3108139	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3108140	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3108141	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3108143	0.94[EUR][1000 genomes]
rs3108148	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3113244	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4383690	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107330800-107332600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr4:107331000-107332400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:107331000-107333600	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr4:107331200-107335600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:107331200-107335600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:107331400-107332400	Enhancers	H1 Cell Line	embryonic stem cell
7	chr4:107331400-107332600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:107331400-107332600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr4:107331400-107333400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:107331600-107333200	Weak transcription	Fetal Kidney	kidney
11	chr4:107331600-107335600	Weak transcription	Osteobl	bone
12	chr4:107331800-107332800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:107332000-107332400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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