Variant report

Variant	rs4383690
Chromosome Location	chr4:107366847-107366848
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11938517	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12506993	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17036734	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap]
rs2866904	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2866905	0.92[EUR][1000 genomes]
rs2949632	0.82[TSI][hapmap]
rs3018056	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3018076	0.82[TSI][hapmap]
rs3108137	0.89[EUR][1000 genomes]
rs3108139	0.91[EUR][1000 genomes]
rs3108140	0.91[EUR][1000 genomes]
rs3108141	0.90[EUR][1000 genomes]
rs3108143	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3108148	0.88[EUR][1000 genomes]
rs3113244	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107366200-107367600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:107366600-107369800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:107366600-107370000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr4:107366600-107370600	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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