Variant report

Variant	rs286699
Chromosome Location	chr7:25843055-25843056
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11770089	0.85[ASN][1000 genomes]
rs122506	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1376526	0.85[ASN][1000 genomes]
rs166981	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1993094	0.80[ASN][1000 genomes]
rs286696	0.93[ASN][1000 genomes]
rs286697	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286698	0.91[EUR][1000 genomes]
rs7779030	0.85[ASN][1000 genomes]
rs9639521	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25835800-25844800	Weak transcription	Aorta	Aorta
2	chr7:25835800-25848800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:25836000-25844800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr7:25837800-25844600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:25838000-25844000	Weak transcription	Psoas Muscle	Psoas
6	chr7:25841800-25844000	Enhancers	Colon Smooth Muscle	Colon
7	chr7:25842200-25843200	Weak transcription	Esophagus	oesophagus
8	chr7:25842600-25843400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr7:25842600-25843800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:25842800-25843200	Enhancers	Fetal Muscle Leg	muscle
11	chr7:25842800-25843600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:25842800-25844600	Enhancers	NHEK	skin
13	chr7:25842800-25844800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:25842800-25845000	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr7:25842800-25846400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:25842800-25846600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:25843000-25843200	Enhancers	Fetal Stomach	stomach
18	chr7:25843000-25843400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:25843000-25843400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:25843000-25843400	Enhancers	Left Ventricle	heart
21	chr7:25843000-25845400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:25843000-25845800	Enhancers	HMEC	breast
23	chr7:25843000-25846000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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