Variant report

Variant	rs11770089
Chromosome Location	chr7:25824715-25824716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10233419	0.87[EUR][1000 genomes]
rs122505	0.87[EUR][1000 genomes]
rs122506	0.85[ASN][1000 genomes]
rs1376526	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs166981	0.85[ASN][1000 genomes]
rs2214975	0.88[EUR][1000 genomes]
rs286688	0.87[EUR][1000 genomes]
rs286689	0.86[EUR][1000 genomes]
rs286690	0.87[EUR][1000 genomes]
rs286691	0.87[EUR][1000 genomes]
rs286694	0.87[EUR][1000 genomes]
rs286695	0.87[EUR][1000 genomes]
rs286696	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs286697	0.85[ASN][1000 genomes]
rs286699	0.85[ASN][1000 genomes]
rs7350035	0.89[EUR][1000 genomes]
rs7779030	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7798211	0.95[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9639521	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25816000-25825600	Weak transcription	Aorta	Aorta
2	chr7:25818400-25825400	Weak transcription	Fetal Lung	lung
3	chr7:25818400-25826400	Weak transcription	Fetal Kidney	kidney
4	chr7:25819600-25827000	Weak transcription	Psoas Muscle	Psoas
5	chr7:25821200-25829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:25823000-25842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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