Variant report

Variant	rs122505
Chromosome Location	chr7:25827799-25827800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10233419	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11770089	0.87[EUR][1000 genomes]
rs1376526	0.87[EUR][1000 genomes]
rs2214975	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs286688	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286689	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286690	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286691	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs286694	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs286695	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs286696	0.88[EUR][1000 genomes]
rs7350035	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7779030	0.88[EUR][1000 genomes]
rs7798211	0.81[EUR][1000 genomes]
rs9639521	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv830928	chr7:25820147-25965014	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:25821200-25829600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr7:25823000-25842800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:25824800-25829400	Enhancers	Fetal Stomach	stomach
4	chr7:25825200-25827800	Enhancers	Ovary	ovary
5	chr7:25825400-25829000	Enhancers	Fetal Lung	lung
6	chr7:25825600-25827800	Enhancers	Aorta	Aorta
7	chr7:25825600-25828400	Enhancers	Colon Smooth Muscle	Colon
8	chr7:25825800-25828600	Enhancers	Rectal Smooth Muscle	rectum
9	chr7:25826200-25828200	Enhancers	Fetal Muscle Leg	muscle
10	chr7:25826200-25828200	Enhancers	Stomach Smooth Muscle	stomach
11	chr7:25826600-25828200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr7:25826800-25827800	Enhancers	Adipose Nuclei	Adipose
13	chr7:25827000-25827800	Enhancers	Fetal Intestine Small	intestine
14	chr7:25827000-25827800	Enhancers	Fetal Muscle Trunk	muscle
15	chr7:25827000-25827800	Enhancers	Left Ventricle	heart
16	chr7:25827000-25827800	Enhancers	Psoas Muscle	Psoas
17	chr7:25827400-25828000	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr7:25827400-25835200	Weak transcription	NHLF	lung
19	chr7:25827600-25829400	Weak transcription	Fetal Kidney	kidney
20	chr7:25827600-25829600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:25827600-25829600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr7:25827600-25835200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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